Mtmr3 (myotubularin related protein 3) - Rat Genome Database

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Gene: Mtmr3 (myotubularin related protein 3) Mus musculus
Analyze
Symbol: Mtmr3
Name: myotubularin related protein 3
RGD ID: 1322176
MGI Page MGI
Description: Predicted to enable phosphatase activity and protein phosphatase binding activity. Predicted to be involved in several processes, including cellular response to glucose starvation; phosphatidylinositol metabolic process; and regulation of phosphatidylinositol dephosphorylation. Predicted to act upstream of or within lipid metabolic process. Predicted to be active in cytoplasm and membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Orthologous to human MTMR3 (myotubularin related protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700092A20Rik; AI255150; AW557713; FYVE-D; FYVE-DSP1; MGC78036; mKIAA0371; myotubularin-related protein 3; phosphatidylinositol-3,5-bisphosphate 3-phosphatase; phosphatidylinositol-3-phosphate phosphatase; ZFYVE1; ZFYVE10
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm5043  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,430,867 - 4,544,863 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,430,867 - 4,544,863 (-)EnsemblGRCm39 Ensembl
GRCm38114,480,867 - 4,594,863 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,480,868 - 4,594,863 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,380,871 - 4,494,818 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,382,568 - 4,494,795 (-)NCBIMGSCv36mm8
Celera114,980,322 - 5,095,598 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
membrane  (IBA,ISO)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:19075228   PMID:21267068   PMID:21873635   PMID:24194600   PMID:26586428   PMID:27113764   PMID:30944173   PMID:32325033   PMID:32554809   PMID:37414396   PMID:38355793  


Genomics

Comparative Map Data
Mtmr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,430,867 - 4,544,863 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,430,867 - 4,544,863 (-)EnsemblGRCm39 Ensembl
GRCm38114,480,867 - 4,594,863 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,480,868 - 4,594,863 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,380,871 - 4,494,818 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,382,568 - 4,494,795 (-)NCBIMGSCv36mm8
Celera114,980,322 - 5,095,598 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.94NCBI
MTMR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,883,174 - 30,030,868 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,883,169 - 30,030,868 (+)EnsemblGRCh38hg38GRCh38
GRCh372230,279,163 - 30,426,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,609,158 - 28,756,857 (+)NCBINCBI36Build 36hg18NCBI36
Build 342228,603,752 - 28,748,423NCBI
Celera2214,078,881 - 14,226,583 (+)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2213,241,277 - 13,388,890 (+)NCBIHuRef
CHM1_12230,238,335 - 30,386,025 (+)NCBICHM1_1
T2T-CHM13v2.02230,346,548 - 30,494,210 (+)NCBIT2T-CHM13v2.0
Mtmr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,564,065 - 83,684,573 (-)NCBIGRCr8
mRatBN7.21479,340,523 - 79,460,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,340,513 - 79,461,041 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,778,531 - 83,891,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,018,595 - 85,131,507 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,466,664 - 81,580,179 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,701,559 - 84,820,487 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,701,559 - 84,820,415 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,381,833 - 85,500,463 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,098,317 - 85,234,597 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11485,117,461 - 85,253,742 (-)NCBI
Celera1478,249,424 - 78,367,258 (-)NCBICelera
Cytogenetic Map14q21NCBI
MTMR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,853,368 - 40,000,382 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,554,541 - 42,699,356 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,925,275 - 11,072,554 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12228,728,450 - 28,878,055 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2228,818,273 - 28,872,982 (+)Ensemblpanpan1.1panPan2
MTMR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12623,047,500 - 23,187,694 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2623,047,345 - 23,186,262 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,919,097 - 23,059,144 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,420,711 - 23,562,619 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2623,420,659 - 23,562,637 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12623,130,791 - 23,272,592 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,393,693 - 23,535,519 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,453,960 - 23,595,145 (+)NCBIUU_Cfam_GSD_1.0
LOC101969050
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118111,984,250 - 112,078,675 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366573,792,043 - 3,891,113 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,875,050 - 47,023,487 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,874,977 - 47,022,581 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,912,225 - 50,061,635 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,772,193 - 12,917,177 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,843,491 - 12,912,121 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045113,228,569 - 113,373,101 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,278,779 - 6,338,438 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,193,859 - 6,335,897 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mtmr3
3400 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3008
Count of miRNA genes:683
Interacting mature miRNAs:843
Transcripts:ENSMUST00000040448, ENSMUST00000109943, ENSMUST00000123506, ENSMUST00000128256, ENSMUST00000130716, ENSMUST00000144242, ENSMUST00000155566
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse

Markers in Region
RH136017  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,481,601 - 4,481,748UniSTSGRCm38
MGSCv37114,381,604 - 4,381,751UniSTSGRCm37
Celera114,981,055 - 4,981,202UniSTS
Cytogenetic Map11A1UniSTS
AW557713  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,481,013 - 4,481,136UniSTSGRCm38
MGSCv37114,381,016 - 4,381,139UniSTSGRCm37
Celera114,980,467 - 4,980,590UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH1112.67UniSTS
D11Mit72  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,557,896 - 4,558,058UniSTSGRCm38
MGSCv37114,457,899 - 4,458,061UniSTSGRCm37
Celera115,059,312 - 5,059,476UniSTS
Cytogenetic Map11A1UniSTS
cM Map110.25UniSTS
Whitehead Genetic112.2UniSTS
Whitehead/MRC_RH1112.67UniSTS
Whitehead_YAC11 UniSTS
BM386970  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,538,229 - 4,538,423UniSTSGRCm38
MGSCv37114,438,232 - 4,438,426UniSTSGRCm37
Celera115,039,632 - 5,039,826UniSTS
Cytogenetic Map11A1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001373897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK007036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW046647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX323081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB249296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB527330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF532066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ048010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV557784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX566279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000040448   ⟹   ENSMUSP00000049079
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,430,875 - 4,544,800 (-)Ensembl
GRCm38.p6 Ensembl114,480,875 - 4,546,268 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109943   ⟹   ENSMUSP00000105569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,430,868 - 4,544,815 (-)Ensembl
GRCm38.p6 Ensembl114,480,868 - 4,594,815 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123506   ⟹   ENSMUSP00000122422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,430,880 - 4,544,790 (-)Ensembl
GRCm38.p6 Ensembl114,480,890 - 4,528,406 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128256   ⟹   ENSMUSP00000116315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,432,570 - 4,544,765 (-)Ensembl
GRCm38.p6 Ensembl114,482,752 - 4,528,406 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130716   ⟹   ENSMUSP00000137687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,432,559 - 4,544,863 (-)Ensembl
GRCm38.p6 Ensembl114,482,559 - 4,594,863 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144242
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,441,807 - 4,443,318 (-)Ensembl
GRCm38.p6 Ensembl114,491,807 - 4,493,318 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,430,875 - 4,438,366 (-)Ensembl
GRCm38.p6 Ensembl114,480,875 - 4,488,366 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249884   ⟹   ENSMUSP00000159981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,430,875 - 4,544,781 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249885   ⟹   ENSMUSP00000159982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,432,553 - 4,544,780 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249887   ⟹   ENSMUSP00000159984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,464,084 - 4,544,773 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249889   ⟹   ENSMUSP00000159986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,430,867 - 4,544,811 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249890   ⟹   ENSMUSP00000159987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,430,870 - 4,544,780 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249891   ⟹   ENSMUSP00000159988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,430,875 - 4,544,784 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249892   ⟹   ENSMUSP00000159989
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,432,554 - 4,544,840 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249893   ⟹   ENSMUSP00000159990
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,432,559 - 4,544,759 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249894   ⟹   ENSMUSP00000159991
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,464,077 - 4,544,815 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249895   ⟹   ENSMUSP00000159992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,464,083 - 4,544,788 (-)Ensembl
RefSeq Acc Id: NM_001373897   ⟹   NP_001360826
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,430,875 - 4,544,790 (-)NCBI
GRCm38114,480,875 - 4,594,790 (-)NCBI
Sequence:
RefSeq Acc Id: NM_028860   ⟹   NP_083136
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,430,868 - 4,544,815 (-)NCBI
GRCm38114,480,868 - 4,594,815 (-)NCBI
MGSCv37114,380,871 - 4,494,818 (-)RGD
Celera114,980,322 - 5,095,598 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514845   ⟹   XP_006514908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,430,867 - 4,544,863 (-)NCBI
GRCm38114,480,867 - 4,594,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514846   ⟹   XP_006514909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,430,867 - 4,544,775 (-)NCBI
GRCm38114,480,867 - 4,594,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514848   ⟹   XP_006514911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,430,867 - 4,544,863 (-)NCBI
GRCm38114,480,867 - 4,594,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157036   ⟹   XP_036012929
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,430,867 - 4,499,266 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157037   ⟹   XP_036012930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,430,867 - 4,499,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157038   ⟹   XP_036012931
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,430,867 - 4,544,863 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949519
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,430,867 - 4,544,863 (-)NCBI
GRCm38114,480,867 - 4,594,863 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_083136   ⟸   NM_028860
- Peptide Label: isoform 2
- UniProtKB: B1ATD5 (UniProtKB/TrEMBL),   Q66I45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514911   ⟸   XM_006514848
- Peptide Label: isoform X2
- UniProtKB: B1ATD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514908   ⟸   XM_006514845
- Peptide Label: isoform X1
- UniProtKB: R4GML8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514909   ⟸   XM_006514846
- Peptide Label: isoform X1
- UniProtKB: R4GML8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001360826   ⟸   NM_001373897
- Peptide Label: isoform 1
- UniProtKB: Q8K296 (UniProtKB/Swiss-Prot),   Q5NCA4 (UniProtKB/Swiss-Prot),   R4GML8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000137687   ⟸   ENSMUST00000130716
RefSeq Acc Id: ENSMUSP00000049079   ⟸   ENSMUST00000040448
RefSeq Acc Id: ENSMUSP00000105569   ⟸   ENSMUST00000109943
RefSeq Acc Id: ENSMUSP00000116315   ⟸   ENSMUST00000128256
RefSeq Acc Id: ENSMUSP00000122422   ⟸   ENSMUST00000123506
RefSeq Acc Id: XP_036012931   ⟸   XM_036157038
- Peptide Label: isoform X4
- UniProtKB: M0QW74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012929   ⟸   XM_036157036
- Peptide Label: isoform X1
- UniProtKB: R4GML8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012930   ⟸   XM_036157037
- Peptide Label: isoform X3
- UniProtKB: B1ATD5 (UniProtKB/TrEMBL),   Q66I45 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000159991   ⟸   ENSMUST00000249894
RefSeq Acc Id: ENSMUSP00000159984   ⟸   ENSMUST00000249887
RefSeq Acc Id: ENSMUSP00000159982   ⟸   ENSMUST00000249885
RefSeq Acc Id: ENSMUSP00000159989   ⟸   ENSMUST00000249892
RefSeq Acc Id: ENSMUSP00000159981   ⟸   ENSMUST00000249884
RefSeq Acc Id: ENSMUSP00000159988   ⟸   ENSMUST00000249891
RefSeq Acc Id: ENSMUSP00000159992   ⟸   ENSMUST00000249895
RefSeq Acc Id: ENSMUSP00000159986   ⟸   ENSMUST00000249889
RefSeq Acc Id: ENSMUSP00000159990   ⟸   ENSMUST00000249893
RefSeq Acc Id: ENSMUSP00000159987   ⟸   ENSMUST00000249890
Protein Domains
FYVE-type   Myotubularin phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K296-F1-model_v2 AlphaFold Q8K296 1-1196 view protein structure

Promoters
RGD ID:6821304
Promoter ID:MM_KWN:6235
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC007HUW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36114,386,906 - 4,387,807 (-)MPROMDB
RGD ID:6821352
Promoter ID:MM_KWN:6240
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000093376,   NM_028860,   OTTMUST00000011296,   UC007HUY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36114,494,654 - 4,495,154 (-)MPROMDB
RGD ID:8673796
Promoter ID:EPDNEW_M14929
Type:initiation region
Name:Mtmr3_2
Description:Mus musculus myotubularin related protein 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14930  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38114,497,565 - 4,497,625EPDNEW
RGD ID:8673798
Promoter ID:EPDNEW_M14930
Type:initiation region
Name:Mtmr3_1
Description:Mus musculus myotubularin related protein 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14929  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38114,594,790 - 4,594,850EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921552 AgrOrtholog
Ensembl Genes ENSMUSG00000034354 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000040448.13 UniProtKB/TrEMBL
  ENSMUST00000109943 ENTREZGENE
  ENSMUST00000109943.10 UniProtKB/TrEMBL
  ENSMUST00000123506 ENTREZGENE
  ENSMUST00000123506.8 UniProtKB/TrEMBL
  ENSMUST00000128256 ENTREZGENE
  ENSMUST00000128256.2 UniProtKB/TrEMBL
  ENSMUST00000130716 ENTREZGENE
  ENSMUST00000130716.8 UniProtKB/TrEMBL
  ENSMUST00000249884 ENTREZGENE
  ENSMUST00000249885 ENTREZGENE
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro MTMR3_Pase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MTMR3_PH-GRAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myotubularin-like_Pase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1921552 ENTREZGENE
NCBI Gene 74302 ENTREZGENE
PANTHER ARRESTIN DOMAIN-CONTAINING PROTEIN D UniProtKB/TrEMBL
  ARRESTIN DOMAIN-CONTAINING PROTEIN D UniProtKB/TrEMBL
  MYOTUBULARIN-RELATED PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10807 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myotub-related UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mtmr3 PhenoGen
PROSITE PPASE_MYOTUBULARIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1ATD4 ENTREZGENE, UniProtKB/TrEMBL
  B1ATD5 ENTREZGENE, UniProtKB/TrEMBL
  M0QW74 ENTREZGENE, UniProtKB/TrEMBL
  MTMR3_MOUSE UniProtKB/Swiss-Prot
  Q5NCA4 ENTREZGENE
  Q66I45 ENTREZGENE, UniProtKB/TrEMBL
  Q80U24_MOUSE UniProtKB/TrEMBL
  Q8K296 ENTREZGENE
  Q8R0N4_MOUSE UniProtKB/TrEMBL
  Q9CVQ1_MOUSE UniProtKB/TrEMBL
  R4GML8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q5NCA4 UniProtKB/Swiss-Prot