Cbx1 (chromobox 1) - Rat Genome Database

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Gene: Cbx1 (chromobox 1) Mus musculus
Analyze
Symbol: Cbx1
Name: chromobox 1
RGD ID: 1321783
MGI Page MGI
Description: Enables identical protein binding activity. Acts upstream of or within negative regulation of DNA-templated transcription. Located in chromocenter; female pronucleus; and male pronucleus. Part of pericentric heterochromatin. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human CBX1 (chromobox 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cbx; Cbx-r; Cbx-rs2; chromobox homolog 1; chromobox protein homolog 1; E430007M08Rik; heterochromatin protein 1 homolog beta; heterochromatin protein p25; HP1; HP1 beta; HP1B; Hp1be; Hp1beta; M31; MOD; MOD1; modifier 1 protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7128  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,679,506 - 96,699,808 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,679,953 - 96,699,466 (+)EnsemblGRCm39 Ensembl
GRCm381196,788,680 - 96,808,982 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,789,127 - 96,808,640 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,650,450 - 96,669,954 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,605,249 - 96,624,730 (+)NCBIMGSCv36mm8
Celera11106,447,917 - 106,455,791 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors. Le Douarin B, etal., EMBO J 1996 Dec 2;15(23):6701-15.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Isolation and characterization of Suv39h2, a second histone H3 methyltransferase gene that displays testis-specific expression. O'Carroll D, etal., Mol Cell Biol 2000 Dec;20(24):9423-33.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. The heterochromatin protein 1 family is regulated in prostate development and cancer. Shapiro E, etal., J Urol. 2008 Jun;179(6):2435-9. doi: 10.1016/j.juro.2008.01.091. Epub 2008 Apr 23.
Additional References at PubMed
PMID:1543904   PMID:1708124   PMID:7579889   PMID:8889548   PMID:8986815   PMID:9021147   PMID:9171360   PMID:9493348   PMID:10202156   PMID:10330177   PMID:10349636   PMID:10549285  
PMID:10562550   PMID:10747027   PMID:10938122   PMID:11042159   PMID:11076861   PMID:11101528   PMID:11242053   PMID:11571267   PMID:11793364   PMID:11882902   PMID:11980720   PMID:12242305  
PMID:12477932   PMID:12520002   PMID:12560554   PMID:12904583   PMID:14610273   PMID:14681479   PMID:14765118   PMID:15085137   PMID:15145825   PMID:15226823   PMID:15322135   PMID:15342492  
PMID:15680357   PMID:15750587   PMID:15922569   PMID:15947784   PMID:16127177   PMID:16141072   PMID:16141073   PMID:16547356   PMID:16602821   PMID:16880268   PMID:17261847   PMID:17314413  
PMID:17381543   PMID:17558186   PMID:17855382   PMID:17891782   PMID:17967808   PMID:18311137   PMID:18316406   PMID:18438399   PMID:18799693   PMID:19015315   PMID:19423573   PMID:19521500  
PMID:19861498   PMID:19922871   PMID:20033197   PMID:20360068   PMID:20423503   PMID:21163256   PMID:21245376   PMID:21267068   PMID:21576353   PMID:21589869   PMID:21677750   PMID:21778144  
PMID:21873635   PMID:22622086   PMID:22770845   PMID:23629965   PMID:23645681   PMID:23748610   PMID:24611931   PMID:25201136   PMID:25680957   PMID:25801166   PMID:26364738   PMID:26365490  
PMID:26415775   PMID:26496610   PMID:27352031   PMID:28059589   PMID:28185240   PMID:28378742   PMID:28981838   PMID:29795351   PMID:30598549   PMID:30973865   PMID:31077711   PMID:31961023  
PMID:32020053   PMID:32325033   PMID:32651609   PMID:34214177   PMID:36189882   PMID:36547371   PMID:37087635  


Genomics

Comparative Map Data
Cbx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,679,506 - 96,699,808 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,679,953 - 96,699,466 (+)EnsemblGRCm39 Ensembl
GRCm381196,788,680 - 96,808,982 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,789,127 - 96,808,640 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,650,450 - 96,669,954 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,605,249 - 96,624,730 (+)NCBIMGSCv36mm8
Celera11106,447,917 - 106,455,791 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.11NCBI
CBX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,070,059 - 48,101,478 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,070,052 - 48,101,478 (-)EnsemblGRCh38hg38GRCh38
GRCh371746,147,421 - 46,178,840 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,502,420 - 43,533,360 (-)NCBINCBI36Build 36hg18NCBI36
Build 341743,502,421 - 43,533,360NCBI
Celera1742,600,238 - 42,633,237 (-)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1741,515,771 - 41,548,743 (-)NCBIHuRef
CHM1_11746,212,408 - 46,243,879 (-)NCBICHM1_1
T2T-CHM13v2.01748,931,877 - 48,964,812 (-)NCBIT2T-CHM13v2.0
Cbx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,266,746 - 82,286,431 (+)NCBIGRCr8
mRatBN7.21081,770,307 - 81,789,981 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1081,770,342 - 81,791,096 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1086,718,002 - 86,737,691 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,216,048 - 86,235,741 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01081,608,645 - 81,628,335 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01084,656,698 - 84,677,112 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,669,914 - 84,675,741 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,449,614 - 84,470,027 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,544,537 - 85,564,903 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11085,539,437 - 85,578,851 (+)NCBI
Celera1080,531,367 - 80,552,403 (+)NCBICelera
Cytogenetic Map10q31NCBI
Cbx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,066,628 - 13,083,693 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,066,628 - 13,083,693 (+)NCBIChiLan1.0ChiLan1.0
CBX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21916,999,946 - 17,033,748 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11718,965,548 - 18,999,327 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0179,434,141 - 9,467,865 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,616,923 - 9,647,883 (+)NCBIpanpan1.1PanPan1.1panPan2
CBX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,363,566 - 24,369,060 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,358,885 - 24,369,060 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha923,829,363 - 23,850,430 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0925,157,318 - 25,178,406 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl925,158,689 - 25,177,393 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1923,926,775 - 23,947,857 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0924,187,435 - 24,208,348 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0924,314,854 - 24,335,770 (-)NCBIUU_Cfam_GSD_1.0
Cbx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,813,951 - 23,832,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649013,242,949 - 13,261,195 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649013,242,949 - 13,261,195 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,315,518 - 24,351,052 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,319,104 - 24,351,057 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,219,822 - 24,248,118 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CBX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,471,298 - 68,508,180 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607739,523,509 - 39,556,340 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cbx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247954,667,765 - 4,689,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247954,667,765 - 4,689,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cbx1
857 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1320
Count of miRNA genes:609
Interacting mature miRNAs:791
Transcripts:ENSMUST00000018810, ENSMUST00000079702, ENSMUST00000093943, ENSMUST00000134585, ENSMUST00000141257
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118869958899081597Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
13524529Bodwtq10_mbody wweight QTL 10 (mouse)119067951297699512Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
14700796Syncq9_msynovial calcification QTL 9 (mouse)119593782696992826Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse

Markers in Region
Cbx1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371196,664,234 - 96,664,422UniSTSGRCm37
Celera11106,450,067 - 106,450,255UniSTS
Cytogenetic Map11DUniSTS
cM Map1158.0UniSTS
cM Map1158.0UniSTS
RH135339  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381196,807,875 - 96,808,079UniSTSGRCm38
GRCm38815,879,479 - 15,879,683UniSTSGRCm38
MGSCv37815,879,479 - 15,879,683UniSTSGRCm37
MGSCv371196,669,189 - 96,669,393UniSTSGRCm37
Celera11106,455,026 - 106,455,230UniSTS
Cytogenetic Map11DUniSTS
cM Map1158.0UniSTS
Cbx1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381196,802,920 - 96,803,108UniSTSGRCm38
MGSCv371196,664,234 - 96,664,422UniSTSGRCm37
Celera11106,450,067 - 106,450,255UniSTS
Cytogenetic Map11DUniSTS
cM Map1158.0UniSTS
Cbx1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11DUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ132657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X56690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000018810   ⟹   ENSMUSP00000018810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,679,953 - 96,694,795 (+)Ensembl
GRCm38.p6 Ensembl1196,789,127 - 96,803,969 (+)Ensembl
RefSeq Acc Id: ENSMUST00000079702   ⟹   ENSMUSP00000078640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,680,075 - 96,699,366 (+)Ensembl
GRCm38.p6 Ensembl1196,789,249 - 96,808,540 (+)Ensembl
RefSeq Acc Id: ENSMUST00000093943   ⟹   ENSMUSP00000091475
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,679,985 - 96,699,466 (+)Ensembl
GRCm38.p6 Ensembl1196,789,159 - 96,808,640 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134585   ⟹   ENSMUSP00000137834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,679,963 - 96,698,975 (+)Ensembl
GRCm38.p6 Ensembl1196,789,137 - 96,808,149 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,680,001 - 96,692,231 (+)Ensembl
GRCm38.p6 Ensembl1196,789,175 - 96,801,405 (+)Ensembl
RefSeq Acc Id: NM_001362560   ⟹   NP_001349489
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,961 - 96,698,975 (+)NCBI
GRCm381196,789,135 - 96,808,149 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362561   ⟹   NP_001349490
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,961 - 96,698,975 (+)NCBI
GRCm381196,789,135 - 96,808,149 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362563   ⟹   NP_001349492
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,961 - 96,698,975 (+)NCBI
GRCm381196,789,135 - 96,808,149 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362564   ⟹   NP_001349493
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,961 - 96,699,469 (+)NCBI
GRCm381196,789,135 - 96,808,643 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007622   ⟹   NP_031648
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,961 - 96,699,469 (+)NCBI
GRCm381196,789,135 - 96,808,643 (+)NCBI
MGSCv371196,650,450 - 96,669,954 (+)RGD
Celera11106,447,917 - 106,455,791 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_155761
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,961 - 96,698,975 (+)NCBI
GRCm381196,789,135 - 96,808,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532102   ⟹   XP_006532165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,506 - 96,698,975 (+)NCBI
GRCm381196,788,680 - 96,808,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314242   ⟹   XP_017169731
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,506 - 96,699,808 (+)NCBI
GRCm381196,788,680 - 96,808,982 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949267
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,506 - 96,698,975 (+)NCBI
GRCm381196,788,680 - 96,808,149 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949268
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,506 - 96,698,975 (+)NCBI
GRCm381196,788,680 - 96,808,149 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949269
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,679,506 - 96,699,808 (+)NCBI
GRCm381196,788,680 - 96,808,982 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031648   ⟸   NM_007622
- Peptide Label: isoform 1
- UniProtKB: P83917 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532165   ⟸   XM_006532102
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169731   ⟸   XM_017314242
- Peptide Label: isoform X1
- UniProtKB: P83917 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001349493   ⟸   NM_001362564
- Peptide Label: isoform 2
- UniProtKB: Q9CYJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349489   ⟸   NM_001362560
- Peptide Label: isoform 1
- UniProtKB: P83917 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001349490   ⟸   NM_001362561
- Peptide Label: isoform 1
- UniProtKB: P83917 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001349492   ⟸   NM_001362563
- Peptide Label: isoform 1
- UniProtKB: P83917 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000078640   ⟸   ENSMUST00000079702
RefSeq Acc Id: ENSMUSP00000091475   ⟸   ENSMUST00000093943
RefSeq Acc Id: ENSMUSP00000137834   ⟸   ENSMUST00000134585
RefSeq Acc Id: ENSMUSP00000018810   ⟸   ENSMUST00000018810
Protein Domains
Chromo

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P83917-F1-model_v2 AlphaFold P83917 1-185 view protein structure

Promoters
RGD ID:6820541
Promoter ID:MM_KWN:9423
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000018810,   ENSMUST00000079702,   NM_007622,   OTTMUST00000003221,   OTTMUST00000003222
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361196,650,259 - 96,650,759 (+)MPROMDB
RGD ID:8676354
Promoter ID:EPDNEW_M16208
Type:initiation region
Name:Cbx1_1
Description:Mus musculus chromobox 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381196,789,135 - 96,789,195EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105369 AgrOrtholog
Ensembl Genes ENSMUSG00000018666 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018810 ENTREZGENE
  ENSMUST00000018810.10 UniProtKB/TrEMBL
  ENSMUST00000079702 ENTREZGENE
  ENSMUST00000079702.4 UniProtKB/TrEMBL
  ENSMUST00000093943 ENTREZGENE
  ENSMUST00000093943.10 UniProtKB/Swiss-Prot
  ENSMUST00000134585 ENTREZGENE
  ENSMUST00000134585.8 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chromo-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_dom_subgr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_shadow_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromodomain_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12412 UniProtKB/Swiss-Prot
MGD MGI:105369 ENTREZGENE
NCBI Gene 12412 ENTREZGENE
PANTHER CHROMOBOX PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHROMOBOX PROTEIN HOMOLOG 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Chromo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_shadow UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cbx1 PhenoGen
PRINTS CHROMODOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CHROMO_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHROMO_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CHROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ChSh UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CBX1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q7TPM0_MOUSE UniProtKB/TrEMBL
  Q9CYJ8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary P23197 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-10 Cbx1  chromobox 1  Cbx1  chromobox homolog 1 (Drosophila HP1 beta)  Symbol and/or name change 5135510 APPROVED