Ap4b1 (adaptor-related protein complex AP-4, beta 1) - Rat Genome Database

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Gene: Ap4b1 (adaptor-related protein complex AP-4, beta 1) Mus musculus
Analyze
Symbol: Ap4b1
Name: adaptor-related protein complex AP-4, beta 1
RGD ID: 1321486
MGI Page MGI
Description: Involved in protein localization to somatodendritic compartment and protein targeting. Located in trans-Golgi network. Is expressed in cerebral cortex ventricular layer and cortical plate. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 47. Orthologous to human AP4B1 (adaptor related protein complex 4 subunit beta 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810038H16Rik; adapter-related protein complex 4 subunit beta-1; adaptor-related protein complex 4 subunit beta-1; AP-4 adapter complex subunit beta; AP-4 adaptor complex subunit beta; AP-4 beta-4; AP-4 complex subunit beta-1; Ap4b4; AV004952; beta subunit of AP-4; beta4-adaptin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393103,716,375 - 103,729,341 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3103,716,836 - 103,729,341 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl3103,716,889 - 103,745,964 (+)EnsemblGRCm39 Ensembl
GRCm383103,809,511 - 103,822,025 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,809,573 - 103,838,648 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,809,520 - 103,822,025 (+)EnsemblGRCm38mm10GRCm38
MGSCv373103,613,440 - 103,625,948 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363103,938,689 - 103,951,084 (+)NCBIMGSCv36mm8
Celera3106,012,852 - 106,025,373 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10066790   PMID:10349636   PMID:10436028   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18341993   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:31142229   PMID:32968282   PMID:34321999  


Genomics

Comparative Map Data
Ap4b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393103,716,375 - 103,729,341 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3103,716,836 - 103,729,341 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl3103,716,889 - 103,745,964 (+)EnsemblGRCm39 Ensembl
GRCm383103,809,511 - 103,822,025 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,809,573 - 103,838,648 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,809,520 - 103,822,025 (+)EnsemblGRCm38mm10GRCm38
MGSCv373103,613,440 - 103,625,948 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363103,938,689 - 103,951,084 (+)NCBIMGSCv36mm8
Celera3106,012,852 - 106,025,373 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.52NCBI
AP4B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381113,894,194 - 113,905,028 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1113,894,194 - 113,905,712 (-)EnsemblGRCh38hg38GRCh38
GRCh371114,436,816 - 114,447,650 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361114,239,201 - 114,249,215 (-)NCBINCBI36Build 36hg18NCBI36
Build 341114,149,719 - 114,159,734NCBI
Celera1112,666,893 - 112,676,965 (-)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1112,295,487 - 112,305,866 (-)NCBIHuRef
CHM1_11114,552,230 - 114,562,601 (-)NCBICHM1_1
T2T-CHM13v2.01113,905,856 - 113,916,690 (-)NCBIT2T-CHM13v2.0
Ap4b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82194,006,926 - 194,018,971 (+)NCBIGRCr8
mRatBN7.22191,318,485 - 191,330,531 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2191,318,482 - 191,330,531 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2198,915,531 - 198,927,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02196,788,260 - 196,800,203 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02191,605,234 - 191,617,177 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02206,293,679 - 206,305,705 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2206,293,720 - 206,305,702 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02225,717,430 - 225,729,415 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42199,034,351 - 199,046,334 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12198,997,395 - 199,008,795 (+)NCBI
Celera2183,790,302 - 183,802,248 (+)NCBICelera
Cytogenetic Map2q34NCBI
Ap4b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543517,163,099 - 17,173,427 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543517,163,099 - 17,173,427 (-)NCBIChiLan1.0ChiLan1.0
AP4B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21106,554,115 - 106,564,101 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11106,147,526 - 106,157,499 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0188,652,196 - 88,662,237 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11123,700,863 - 123,711,481 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1123,701,343 - 123,711,481 (+)Ensemblpanpan1.1panPan2
AP4B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11751,701,663 - 51,732,022 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1751,701,979 - 51,711,489 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1751,353,016 - 51,383,629 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01752,579,916 - 52,610,560 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1752,579,931 - 52,589,774 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11751,587,213 - 51,617,813 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01751,655,485 - 51,686,106 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01752,228,007 - 52,258,633 (-)NCBIUU_Cfam_GSD_1.0
Ap4b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505815,211,933 - 15,222,592 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366902,255,159 - 2,265,847 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366902,255,159 - 2,265,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP4B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4106,656,809 - 106,672,639 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14106,656,632 - 106,668,252 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24116,861,896 - 116,873,401 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AP4B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12019,757,362 - 19,767,419 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2019,757,695 - 19,768,304 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603822,527,470 - 22,537,862 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ap4b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247729,569,971 - 9,578,844 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247729,568,246 - 9,579,736 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ap4b1
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:341
Count of miRNA genes:147
Interacting mature miRNAs:156
Transcripts:ENSMUST00000047285, ENSMUST00000076599, ENSMUST00000106823, ENSMUST00000106824
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
8655600Cia5b_mcollagen induced arthritis QTL 5b (mouse)Not determined3100655184103744779Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse

Markers in Region
AV004952  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383103,821,530 - 103,821,622UniSTSGRCm38
MGSCv373103,625,453 - 103,625,545UniSTSGRCm37
Celera3106,024,878 - 106,024,970UniSTS
Cytogenetic Map3F2.2UniSTS
Whitehead/MRC_RH31217.34UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_375568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE630857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY129343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU210953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000047285   ⟹   ENSMUSP00000044262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,716,944 - 103,729,341 (+)Ensembl
GRCm38.p6 Ensembl3103,809,628 - 103,822,025 (+)Ensembl
RefSeq Acc Id: ENSMUST00000076599   ⟹   ENSMUSP00000075904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,716,836 - 103,729,339 (+)Ensembl
GRCm38.p6 Ensembl3103,809,520 - 103,822,023 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106823   ⟹   ENSMUSP00000102436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,716,916 - 103,729,339 (+)Ensembl
GRCm38.p6 Ensembl3103,809,600 - 103,822,023 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106824   ⟹   ENSMUSP00000102437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,716,909 - 103,729,144 (+)Ensembl
GRCm38.p6 Ensembl3103,809,593 - 103,821,828 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199686   ⟹   ENSMUSP00000142457
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,722,374 - 103,728,000 (+)Ensembl
GRCm38.p6 Ensembl3103,815,058 - 103,820,684 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199710   ⟹   ENSMUSP00000143463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,716,889 - 103,745,964 (+)Ensembl
GRCm38.p6 Ensembl3103,809,573 - 103,838,648 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,717,180 - 103,722,184 (+)Ensembl
GRCm38.p6 Ensembl3103,809,864 - 103,814,868 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200377   ⟹   ENSMUSP00000143355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,717,152 - 103,729,077 (+)Ensembl
GRCm38.p6 Ensembl3103,809,836 - 103,821,761 (+)Ensembl
RefSeq Acc Id: NM_001163552   ⟹   NP_001157024
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,716,833 - 103,729,341 (+)NCBI
GRCm383103,809,517 - 103,822,025 (+)ENTREZGENE
MGSCv373103,613,440 - 103,625,948 (+)RGD
Celera3106,012,852 - 106,025,373 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001163553   ⟹   NP_001157025
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,716,833 - 103,729,341 (+)NCBI
GRCm383103,809,517 - 103,822,025 (+)ENTREZGENE
MGSCv373103,613,440 - 103,625,948 (+)RGD
Celera3106,012,852 - 106,025,373 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026193   ⟹   NP_080469
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,716,833 - 103,729,341 (+)NCBI
GRCm383103,809,517 - 103,822,025 (+)ENTREZGENE
MGSCv373103,613,440 - 103,625,948 (+)RGD
Celera3106,012,852 - 106,025,373 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501932   ⟹   XP_006501995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,717,284 - 103,729,341 (+)NCBI
GRCm383103,809,968 - 103,822,025 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501933   ⟹   XP_006501996
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,717,285 - 103,729,341 (+)NCBI
GRCm383103,809,970 - 103,822,025 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163245   ⟹   XP_036019138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,716,375 - 103,729,341 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163246   ⟹   XP_036019139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,716,780 - 103,729,341 (+)NCBI
Sequence:
RefSeq Acc Id: XR_375568
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,716,735 - 103,729,341 (+)NCBI
GRCm383103,809,511 - 103,822,025 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080469   ⟸   NM_026193
- Peptide Label: isoform a
- UniProtKB: B0V3P2 (UniProtKB/Swiss-Prot),   Q9WV76 (UniProtKB/Swiss-Prot),   Q9D8S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157024   ⟸   NM_001163552
- Peptide Label: isoform a
- UniProtKB: B0V3P2 (UniProtKB/Swiss-Prot),   Q9WV76 (UniProtKB/Swiss-Prot),   Q9D8S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157025   ⟸   NM_001163553
- Peptide Label: isoform b
- UniProtKB: B0V3P4 (UniProtKB/TrEMBL),   Q3TN27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501995   ⟸   XM_006501932
- Peptide Label: isoform X2
- UniProtKB: Q9D8S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501996   ⟸   XM_006501933
- Peptide Label: isoform X2
- UniProtKB: Q9D8S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000142457   ⟸   ENSMUST00000199686
RefSeq Acc Id: ENSMUSP00000143463   ⟸   ENSMUST00000199710
RefSeq Acc Id: ENSMUSP00000102436   ⟸   ENSMUST00000106823
RefSeq Acc Id: ENSMUSP00000102437   ⟸   ENSMUST00000106824
RefSeq Acc Id: ENSMUSP00000044262   ⟸   ENSMUST00000047285
RefSeq Acc Id: ENSMUSP00000075904   ⟸   ENSMUST00000076599
RefSeq Acc Id: ENSMUSP00000143355   ⟸   ENSMUST00000200377
RefSeq Acc Id: XP_036019138   ⟸   XM_036163245
- Peptide Label: isoform X1
- UniProtKB: Q9WV76 (UniProtKB/Swiss-Prot),   B0V3P2 (UniProtKB/Swiss-Prot),   Q9D8S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019139   ⟸   XM_036163246
- Peptide Label: isoform X1
- UniProtKB: Q9WV76 (UniProtKB/Swiss-Prot),   B0V3P2 (UniProtKB/Swiss-Prot),   Q9D8S2 (UniProtKB/TrEMBL)
Protein Domains
Beta-adaptin appendage C-terminal subdomain   Clathrin/coatomer adaptor adaptin-like N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WV76-F1-model_v2 AlphaFold Q9WV76 1-738 view protein structure

Promoters
RGD ID:6833439
Promoter ID:MM_KWN:35610
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000106824,   ENSMUST00000106834,   NM_001025312,   NM_001163552,   NM_001163553,   OTTMUST00000053663,   OTTMUST00000053666,   OTTMUST00000053668,   OTTMUST00000053679,   UC008QTP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363103,613,466 - 103,614,267 (+)MPROMDB
RGD ID:6881880
Promoter ID:EPDNEW_M4391
Type:initiation region
Name:Ap4b1_1
Description:Mus musculus adaptor-related protein complex AP-4, beta 1 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383103,809,600 - 103,809,660EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1337130 AgrOrtholog
Ensembl Genes ENSMUSG00000032952 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUSG00000105053 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047285 ENTREZGENE
  ENSMUST00000047285.7 UniProtKB/Swiss-Prot
  ENSMUST00000076599 ENTREZGENE
  ENSMUST00000076599.8 UniProtKB/Swiss-Prot
  ENSMUST00000106823 ENTREZGENE
  ENSMUST00000106823.8 UniProtKB/TrEMBL
  ENSMUST00000106824.8 UniProtKB/TrEMBL
  ENSMUST00000199686.2 UniProtKB/TrEMBL
  ENSMUST00000199710.2 UniProtKB/TrEMBL
  ENSMUST00000200377.5 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.310.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AP_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AP_complex_bsu_1_2_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B-adaptin_app_sub_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin/coatomer_adapt-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TBP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67489 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1337130 ENTREZGENE
NCBI Gene 67489 ENTREZGENE
PANTHER AP-4 COMPLEX SUBUNIT BETA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11134 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Adaptin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B2-adapt-app_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ap4b1 PhenoGen
PIRSF AP_complex_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART B2-adapt-app_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDQ2_MOUSE UniProtKB/TrEMBL
  A0A0G2JFY6_MOUSE UniProtKB/TrEMBL
  AP4B1_MOUSE UniProtKB/Swiss-Prot
  B0V3P2 ENTREZGENE
  B0V3P3_MOUSE UniProtKB/TrEMBL
  B0V3P4 ENTREZGENE, UniProtKB/TrEMBL
  Q3TN27 ENTREZGENE, UniProtKB/TrEMBL
  Q7TMS3_MOUSE UniProtKB/TrEMBL
  Q7TND3_MOUSE UniProtKB/TrEMBL
  Q9D8S2 ENTREZGENE, UniProtKB/TrEMBL
  Q9WV76 ENTREZGENE
UniProt Secondary B0V3P2 UniProtKB/Swiss-Prot