Tox (thymocyte selection-associated high mobility group box) - Rat Genome Database

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Gene: Tox (thymocyte selection-associated high mobility group box) Mus musculus
Analyze
Symbol: Tox
Name: thymocyte selection-associated high mobility group box
RGD ID: 1321364
MGI Page MGI
Description: Enables chromatin DNA binding activity. Involved in several processes, including alpha-beta T cell lineage commitment; cerebral cortex neuron differentiation; and regulation of positive thymic T cell selection. Acts upstream of or within hematopoietic or lymphoid organ development; lymphocyte differentiation; and positive regulation of natural killer cell differentiation. Located in nucleus. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; sensory organ; and skeleton. Orthologous to human TOX (thymocyte selection associated high mobility group box).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700007F02Rik; KIAA0808; thymocyte selection-associated high mobility group box protein TOX; thymocyte selection-associated HMG box; thymus high mobility group box protein TOX
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3946,686,353 - 6,991,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl46,686,353 - 6,991,557 (-)EnsemblGRCm39 Ensembl
GRCm3846,686,353 - 6,991,557 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl46,686,353 - 6,991,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv3746,614,533 - 6,917,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3646,614,605 - 6,917,870 (-)NCBIMGSCv36mm8
Celera46,590,011 - 6,896,370 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map43.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11850626   PMID:12477932   PMID:12697058   PMID:15078895   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:17412818   PMID:17614941   PMID:18195075   PMID:18287559   PMID:20059953   PMID:20412781   PMID:20818394   PMID:20932939   PMID:21267068   PMID:21491433   PMID:21677750   PMID:21873635  
PMID:22008794   PMID:22021617   PMID:22988430   PMID:24194600   PMID:24550112   PMID:24952961   PMID:25527292   PMID:25915732   PMID:27655933   PMID:27657450   PMID:29183988   PMID:29768177  
PMID:30457570   PMID:31207603   PMID:31207604   PMID:31207605   PMID:31315048   PMID:31358996   PMID:31433982   PMID:31704735   PMID:32396847   PMID:33137688   PMID:34032638   PMID:34321999  
PMID:36369193   PMID:37115203   PMID:37153735   PMID:38355793  


Genomics

Comparative Map Data
Tox
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3946,686,353 - 6,991,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl46,686,353 - 6,991,557 (-)EnsemblGRCm39 Ensembl
GRCm3846,686,353 - 6,991,557 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl46,686,353 - 6,991,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv3746,614,533 - 6,917,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3646,614,605 - 6,917,870 (-)NCBIMGSCv36mm8
Celera46,590,011 - 6,896,370 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map43.04NCBI
TOX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38858,805,412 - 59,119,147 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl858,805,412 - 59,119,147 (-)EnsemblGRCh38hg38GRCh38
GRCh37859,717,971 - 60,031,706 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36859,880,531 - 60,194,321 (-)NCBINCBI36Build 36hg18NCBI36
Celera855,710,971 - 56,023,242 (-)NCBICelera
Cytogenetic Map8q12.1NCBI
HuRef855,205,353 - 55,519,346 (-)NCBIHuRef
CHM1_1859,770,293 - 60,083,901 (-)NCBICHM1_1
T2T-CHM13v2.0859,226,626 - 59,540,470 (-)NCBIT2T-CHM13v2.0
Tox
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8524,672,487 - 24,968,754 (-)NCBIGRCr8
mRatBN7.2519,874,994 - 20,171,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl519,874,467 - 20,171,272 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx522,100,634 - 22,397,195 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0523,694,988 - 23,991,309 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0523,475,253 - 23,771,571 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0519,892,698 - 20,189,721 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl519,892,698 - 20,189,721 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0524,669,152 - 24,965,951 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4520,304,971 - 20,601,406 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1520,306,623 - 20,780,036 (-)NCBI
Celera519,165,384 - 19,461,532 (-)NCBICelera
Cytogenetic Map5q12NCBI
Tox
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544419,453,783 - 19,795,167 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544419,453,789 - 19,796,419 (+)NCBIChiLan1.0ChiLan1.0
TOX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2774,489,654 - 74,795,117 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1850,142,418 - 50,449,169 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0855,246,933 - 55,553,839 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1856,913,312 - 57,219,640 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl856,922,773 - 57,219,410 (-)Ensemblpanpan1.1panPan2
TOX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1299,542,471 - 9,841,759 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl299,544,561 - 9,842,034 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha299,854,051 - 10,152,715 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0299,627,150 - 9,926,763 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl299,626,943 - 9,926,757 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1299,624,865 - 9,923,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0299,750,678 - 10,048,990 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02910,030,303 - 10,329,882 (-)NCBIUU_Cfam_GSD_1.0
Tox
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530360,638,151 - 60,938,267 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649613,847,210 - 14,147,886 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649613,847,210 - 14,146,110 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl473,810,290 - 74,115,151 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1473,810,180 - 74,115,352 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2480,756,768 - 80,906,112 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TOX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1854,777,490 - 55,086,819 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl854,776,015 - 54,927,091 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603986,630,447 - 86,940,047 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tox
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474432,865,720 - 33,218,643 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474432,865,781 - 33,218,453 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tox
9482 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1134
Count of miRNA genes:543
Interacting mature miRNAs:692
Transcripts:ENSMUST00000039987, ENSMUST00000125974, ENSMUST00000147657, ENSMUST00000150082
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11049579Lmr9b_mleishmaniasis resistance 9b (mouse)4120657234Mouse
11049580Lmr9a_mleishmaniasis resistance 9 (mouse)4120657234Mouse
1301274Lmr9_mleishmaniasis resistance 9 (mouse)Not determined4120657234Mouse
10412079Sm1_msusceptibility to Schistosoma mansoni infection 1 (mouse)Not determined4122955614Mouse
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse

Markers in Region
D11S3831  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3846,908,135 - 6,908,285UniSTSGRCm38
MGSCv3746,835,282 - 6,835,432UniSTSGRCm37
Cytogenetic Map4A1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001377078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF472514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL671871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL831740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY240192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02011805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000039987   ⟹   ENSMUSP00000037966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl46,686,353 - 6,990,799 (-)Ensembl
GRCm38.p6 Ensembl46,686,353 - 6,990,799 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl46,688,046 - 6,689,351 (-)Ensembl
GRCm38.p6 Ensembl46,688,046 - 6,689,351 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147657
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl46,740,230 - 6,991,557 (-)Ensembl
GRCm38.p6 Ensembl46,740,230 - 6,991,557 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl46,820,694 - 6,990,483 (-)Ensembl
GRCm38.p6 Ensembl46,820,694 - 6,990,483 (-)Ensembl
RefSeq Acc Id: NM_001377078   ⟹   NP_001364007
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3946,686,353 - 6,991,557 (-)NCBI
GRCm3846,686,353 - 6,991,557 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377079   ⟹   NP_001364008
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3946,686,353 - 6,990,836 (-)NCBI
GRCm3846,686,353 - 6,990,836 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145711   ⟹   NP_663757
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3946,686,353 - 6,990,836 (-)NCBI
GRCm3846,686,353 - 6,990,836 (-)NCBI
MGSCv3746,614,533 - 6,917,870 (-)RGD
Celera46,590,011 - 6,893,060 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017320230   ⟹   XP_017175719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3946,687,432 - 6,990,814 (-)NCBI
GRCm3846,687,438 - 6,990,814 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_663757   ⟸   NM_145711
- UniProtKB: Q8BYQ5 (UniProtKB/Swiss-Prot),   Q8BKH9 (UniProtKB/Swiss-Prot),   Q8R4H0 (UniProtKB/Swiss-Prot),   Q66JW3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017175719   ⟸   XM_017320230
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001364007   ⟸   NM_001377078
- UniProtKB: Q8BYQ5 (UniProtKB/Swiss-Prot),   Q8BKH9 (UniProtKB/Swiss-Prot),   Q66JW3 (UniProtKB/Swiss-Prot),   Q8R4H0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001364008   ⟸   NM_001377079
- UniProtKB: Q8BYQ5 (UniProtKB/Swiss-Prot),   Q8BKH9 (UniProtKB/Swiss-Prot),   Q66JW3 (UniProtKB/Swiss-Prot),   Q8R4H0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000037966   ⟸   ENSMUST00000039987

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66JW3-F1-model_v2 AlphaFold Q66JW3 1-526 view protein structure

Promoters
RGD ID:6836559
Promoter ID:MM_KWN:36599
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4
Transcripts:OTTMUST00000009810,   OTTMUST00000064719,   UC008RXU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3646,917,576 - 6,918,277 (-)MPROMDB
RGD ID:6882826
Promoter ID:EPDNEW_M4835
Type:initiation region
Name:Tox_1
Description:Mus musculus thymocyte selection-associated high mobility groupbox , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4836  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3846,990,502 - 6,990,562EPDNEW
RGD ID:6882770
Promoter ID:EPDNEW_M4836
Type:initiation region
Name:Tox_2
Description:Mus musculus thymocyte selection-associated high mobility groupbox , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4835  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3846,990,808 - 6,990,868EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2181659 AgrOrtholog
Ensembl Genes ENSMUSG00000041272 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000039987 ENTREZGENE
  ENSMUST00000039987.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.30.10 UniProtKB/Swiss-Prot
InterPro HMG_box_dom UniProtKB/Swiss-Prot
  HMG_box_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:252838 UniProtKB/Swiss-Prot
MGD MGI:2181659 ENTREZGENE
NCBI Gene 252838 ENTREZGENE
PANTHER AGAP000281-PA UniProtKB/Swiss-Prot
  THYMOCYTE SELECTION-ASSOCIATED HIGH MOBILITY GROUP BOX PROTEIN TOX UniProtKB/Swiss-Prot
Pfam HMG_box UniProtKB/Swiss-Prot
PhenoGen Tox PhenoGen
PRINTS HIGHMOBLTY12 UniProtKB/Swiss-Prot
PROSITE HMG_BOX_2 UniProtKB/Swiss-Prot
SMART HMG UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47095 UniProtKB/Swiss-Prot
UniProt Q66JW3 ENTREZGENE
  Q8BKH9 ENTREZGENE
  Q8BYQ5 ENTREZGENE
  Q8R4H0 ENTREZGENE
  TOX_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BKH9 UniProtKB/Swiss-Prot
  Q8BYQ5 UniProtKB/Swiss-Prot
  Q8R4H0 UniProtKB/Swiss-Prot