Washc4 (WASH complex subunit 4) - Rat Genome Database

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Gene: Washc4 (WASH complex subunit 4) Mus musculus
Analyze
Symbol: Washc4
Name: WASH complex subunit 4
RGD ID: 1320642
MGI Page MGI
Description: Involved in endosomal transport. Acts upstream of or within several processes, including endolysosomal toll-like receptor signaling pathway; neuromuscular process; and regulation of protein complex stability. Located in endosome. Part of WASH complex. Is expressed in early conceptus and oocyte. Used to study Wiskott-Aldrich syndrome. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 43. Orthologous to human WASHC4 (WASH complex subunit 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A230046K03Rik; AA589518; Kiaa1033; mKIAA1033; RIKEN cDNA A230046K03 gene; WASH complex subunit 7; WASH complex subunit SWIP
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391083,379,073 - 83,432,350 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1083,379,616 - 83,432,337 (+)EnsemblGRCm39 Ensembl
GRCm381083,543,620 - 83,596,473 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1083,543,752 - 83,596,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371083,006,686 - 83,059,218 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,973,571 - 83,026,272 (+)NCBIMGSCv36mm8
Celera1085,531,441 - 85,583,959 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
BLOC-1 complex  (ISO)
early endosome membrane  (NAS)
endosome  (IBA,IDA,ISO)
nucleoplasm  (ISO)
WASH complex  (IBA,IDA,ISO,NAS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Retromer and sorting nexins in endosomal sorting. Gallon M and Cullen PJ, Biochem Soc Trans. 2015 Feb;43(1):33-47. doi: 10.1042/BST20140290.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466305   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14621295  
PMID:15489334   PMID:16141072   PMID:16141073   PMID:19463158   PMID:19922874   PMID:19922875   PMID:20923837   PMID:21267068   PMID:21873635   PMID:24457600   PMID:27390154   PMID:32325033  
PMID:33749590  


Genomics

Comparative Map Data
Washc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391083,379,073 - 83,432,350 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1083,379,616 - 83,432,337 (+)EnsemblGRCm39 Ensembl
GRCm381083,543,620 - 83,596,473 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1083,543,752 - 83,596,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371083,006,686 - 83,059,218 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,973,571 - 83,026,272 (+)NCBIMGSCv36mm8
Celera1085,531,441 - 85,583,959 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.29NCBI
WASHC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812105,107,731 - 105,169,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12105,107,324 - 105,169,130 (+)EnsemblGRCh38hg38GRCh38
GRCh3712105,501,509 - 105,562,908 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612104,025,622 - 104,087,038 (+)NCBINCBI36Build 36hg18NCBI36
Celera12105,165,774 - 105,227,195 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12102,561,190 - 102,622,282 (+)NCBIHuRef
CHM1_112105,467,168 - 105,528,604 (+)NCBICHM1_1
T2T-CHM13v2.012105,069,550 - 105,130,947 (+)NCBIT2T-CHM13v2.0
Washc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,075,546 - 22,127,847 (-)NCBIGRCr8
mRatBN7.2720,187,905 - 20,240,228 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,187,922 - 20,240,226 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,160,116 - 22,212,601 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,322,871 - 24,375,355 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,099,880 - 24,152,367 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,309,279 - 26,361,221 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,311,094 - 26,361,221 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,439,713 - 26,491,674 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,331,578 - 22,383,957 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1722,352,255 - 22,404,214 (-)NCBI
Celera717,390,025 - 17,442,376 (-)NCBICelera
Cytogenetic Map7q13NCBI
Washc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540539,451,404 - 39,499,295 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540539,451,423 - 39,499,295 (+)NCBIChiLan1.0ChiLan1.0
WASHC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210113,177,675 - 113,239,015 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112113,174,083 - 113,235,411 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012102,689,904 - 102,751,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112106,085,558 - 106,146,795 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12106,085,523 - 106,146,796 (+)Ensemblpanpan1.1panPan2
WASHC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,245,944 - 33,300,142 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,248,098 - 33,300,057 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1033,165,407 - 33,219,500 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01034,087,229 - 34,141,324 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1034,087,398 - 34,141,278 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11033,822,702 - 33,876,812 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01034,106,857 - 34,160,925 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01034,300,174 - 34,354,257 (-)NCBIUU_Cfam_GSD_1.0
Washc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,518,997 - 16,574,935 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364929,530,674 - 9,585,462 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364929,527,889 - 9,585,345 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WASHC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,417,130 - 79,474,609 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1579,417,119 - 79,474,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2582,604,200 - 82,645,879 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WASHC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111100,333,806 - 100,395,930 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11100,333,912 - 100,398,713 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037144,618,626 - 144,680,235 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Washc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247503,830,646 - 3,883,458 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Washc4
830 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:638
Count of miRNA genes:407
Interacting mature miRNAs:484
Transcripts:ENSMUST00000038388
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
4141382Ssrq4_mstress response QTL 4 (mouse)Not determined8249093890856102Mouse
12910789Pwgrq19_mpost-weaning growth rate QTL 19 (mouse)108282870092169056Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse

Markers in Region
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
RH124990  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381083,594,281 - 83,594,466UniSTSGRCm38
GRCm383146,192,130 - 146,193,635UniSTSGRCm38
MGSCv371083,057,026 - 83,057,211UniSTSGRCm37
MGSCv373145,855,094 - 145,856,599UniSTSGRCm37
Celera1085,581,766 - 85,581,951UniSTS
Celera3152,641,745 - 152,643,250UniSTS
Cytogenetic Map3H2UniSTS
Cytogenetic Map10C1UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI605037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ561687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000038388   ⟹   ENSMUSP00000039322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1083,379,805 - 83,432,337 (+)Ensembl
GRCm38.p6 Ensembl1083,543,941 - 83,596,473 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217842   ⟹   ENSMUSP00000151417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1083,379,616 - 83,431,298 (+)Ensembl
GRCm38.p6 Ensembl1083,543,752 - 83,595,434 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1083,415,332 - 83,424,064 (+)Ensembl
GRCm38.p6 Ensembl1083,579,468 - 83,588,200 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1083,421,657 - 83,427,587 (+)Ensembl
GRCm38.p6 Ensembl1083,585,793 - 83,591,723 (+)Ensembl
RefSeq Acc Id: NM_001033375   ⟹   NP_001028547
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391083,379,805 - 83,432,337 (+)NCBI
GRCm381083,543,941 - 83,596,473 (+)NCBI
MGSCv371083,006,686 - 83,059,218 (+)RGD
Celera1085,531,441 - 85,583,959 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513737   ⟹   XP_006513800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391083,382,800 - 83,432,248 (+)NCBI
GRCm381083,546,936 - 83,596,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513738   ⟹   XP_006513801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391083,382,968 - 83,432,248 (+)NCBI
GRCm381083,547,104 - 83,596,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513739   ⟹   XP_006513802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391083,396,409 - 83,432,337 (+)NCBI
GRCm381083,560,541 - 83,596,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313963   ⟹   XP_017169452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391083,379,484 - 83,432,337 (+)NCBI
GRCm381083,543,620 - 83,596,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245113   ⟹   XP_030100973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391083,379,816 - 83,432,337 (+)NCBI
GRCm381083,543,952 - 83,596,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155807   ⟹   XP_036011700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391083,379,073 - 83,432,350 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936201
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391083,379,073 - 83,432,348 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001028547   ⟸   NM_001033375
- UniProtKB: Q8CAK8 (UniProtKB/Swiss-Prot),   Q6ZPZ7 (UniProtKB/Swiss-Prot),   Q3TTQ9 (UniProtKB/Swiss-Prot),   Q8CGK0 (UniProtKB/Swiss-Prot),   Q3UMB9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513800   ⟸   XM_006513737
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006513801   ⟸   XM_006513738
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006513802   ⟸   XM_006513739
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017169452   ⟸   XM_017313963
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030100973   ⟸   XM_030245113
- Peptide Label: isoform X5
RefSeq Acc Id: ENSMUSP00000151417   ⟸   ENSMUST00000217842
RefSeq Acc Id: ENSMUSP00000039322   ⟸   ENSMUST00000038388
RefSeq Acc Id: XP_036011700   ⟸   XM_036155807
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UMB9-F1-model_v2 AlphaFold Q3UMB9 1-1173 view protein structure

Promoters
RGD ID:6818832
Promoter ID:MM_KWN:5126
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001033375
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361083,006,569 - 83,007,069 (+)MPROMDB
RGD ID:8672882
Promoter ID:EPDNEW_M14472
Type:initiation region
Name:Washc4_1
Description:Mus musculus WASH complex subunit 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381083,543,984 - 83,544,044EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2441787 AgrOrtholog
Ensembl Genes ENSMUSG00000034560 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038388 ENTREZGENE
  ENSMUST00000038388.7 UniProtKB/Swiss-Prot
  ENSMUST00000217842.2 UniProtKB/TrEMBL
InterPro WASH-7_C UniProtKB/Swiss-Prot
  WASH-7_central UniProtKB/Swiss-Prot
  WASH-7_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WASH7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:319277 UniProtKB/Swiss-Prot
MGD MGI:2441787 ENTREZGENE
NCBI Gene 319277 ENTREZGENE
PANTHER PTHR31409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WASH COMPLEX SUBUNIT 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WASH-7_C UniProtKB/Swiss-Prot
  WASH-7_mid UniProtKB/Swiss-Prot
  WASH-7_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Washc4 PhenoGen
UniProt A0A1W2P6V9_MOUSE UniProtKB/TrEMBL
  Q3TTQ9 ENTREZGENE
  Q3UMB9 ENTREZGENE
  Q6ZPZ7 ENTREZGENE
  Q8CAK8 ENTREZGENE
  Q8CGK0 ENTREZGENE
  WASC4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TTQ9 UniProtKB/Swiss-Prot
  Q6ZPZ7 UniProtKB/Swiss-Prot
  Q8CAK8 UniProtKB/Swiss-Prot
  Q8CGK0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-29 Washc4  WASH complex subunit 4  A230046K03Rik  RIKEN cDNA A230046K03 gene  Symbol and/or name change 5135510 APPROVED