Lrig2 (leucine-rich repeats and immunoglobulin-like domains 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Lrig2 (leucine-rich repeats and immunoglobulin-like domains 2) Mus musculus
Analyze
Symbol: Lrig2
Name: leucine-rich repeats and immunoglobulin-like domains 2
RGD ID: 1319958
MGI Page MGI
Description: Enables signaling receptor binding activity. Acts upstream of or within several processes, including negative regulation of axon regeneration; negative regulation of membrane protein ectodomain proteolysis; and positive regulation of protein localization to cell surface. Located in growth cone; intracellular vesicle; and membrane. Is expressed in several structures, including branchial arch; central nervous system; eye; inner ear; and nasal pit. Human ortholog(s) of this gene implicated in urofacial syndrome. Orthologous to human LRIG2 (leucine rich repeats and immunoglobulin like domains 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4632419I10Rik; BB096938; leucine-rich repeats and immunoglobulin-like domains protein 2; LIG-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,361,296 - 104,419,251 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3104,303,734 - 104,419,234 (-)EnsemblGRCm39 Ensembl
GRCm383104,453,980 - 104,511,918 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,396,418 - 104,511,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv373104,257,906 - 104,315,779 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363104,583,044 - 104,640,917 (-)NCBIMGSCv36mm8
Celera3106,657,999 - 106,716,082 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15226823   PMID:15368895   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:18799693   PMID:18848646   PMID:21267068   PMID:21873635   PMID:24023893   PMID:24086156   PMID:25145936   PMID:25826454   PMID:26651291   PMID:28671696  
PMID:30885509   PMID:32325033   PMID:36183058  


Genomics

Comparative Map Data
Lrig2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,361,296 - 104,419,251 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3104,303,734 - 104,419,234 (-)EnsemblGRCm39 Ensembl
GRCm383104,453,980 - 104,511,918 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,396,418 - 104,511,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv373104,257,906 - 104,315,779 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363104,583,044 - 104,640,917 (-)NCBIMGSCv36mm8
Celera3106,657,999 - 106,716,082 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.62NCBI
LRIG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381113,073,198 - 113,132,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1113,073,198 - 113,132,260 (+)EnsemblGRCh38hg38GRCh38
GRCh371113,615,820 - 113,674,882 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361113,417,354 - 113,468,865 (+)NCBINCBI36Build 36hg18NCBI36
Build 341113,327,872 - 113,379,384NCBI
Celera1111,845,570 - 111,897,091 (+)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1111,474,427 - 111,526,035 (+)NCBIHuRef
CHM1_11113,731,009 - 113,782,515 (+)NCBICHM1_1
T2T-CHM13v2.01113,085,129 - 113,144,193 (+)NCBIT2T-CHM13v2.0
Lrig2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82194,635,686 - 194,705,014 (-)NCBIGRCr8
mRatBN7.22191,947,322 - 192,012,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2191,949,819 - 192,012,579 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2199,545,581 - 199,606,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02197,418,300 - 197,479,465 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02192,235,270 - 192,296,421 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02206,928,708 - 206,997,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2206,931,204 - 206,997,519 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02226,351,489 - 226,419,762 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42199,683,178 - 199,746,140 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12199,647,153 - 199,709,361 (-)NCBI
Celera2184,419,354 - 184,480,307 (-)NCBICelera
Cytogenetic Map2q34NCBI
Lrig2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,468,509 - 16,521,868 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,468,300 - 16,522,503 (+)NCBIChiLan1.0ChiLan1.0
LOC117978217
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21113,923,538 - 113,972,566 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,071,620 - 113,123,956 (-)NCBINHGRI_mPanPan1
LRIG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11762,487,802 - 62,548,883 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,489,462 - 62,548,666 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1762,002,209 - 62,155,979 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01763,661,470 - 63,722,625 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1763,670,920 - 63,722,623 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11762,397,010 - 62,551,758 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01762,454,587 - 62,608,116 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01763,214,287 - 63,367,946 (-)NCBIUU_Cfam_GSD_1.0
Lrig2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505815,834,380 - 15,996,712 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366901,591,965 - 1,641,544 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366901,591,741 - 1,642,183 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRIG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,348,669 - 107,492,516 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,348,662 - 107,511,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,496,595 - 117,511,433 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRIG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12020,523,713 - 20,575,577 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2020,524,352 - 20,574,224 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603823,303,353 - 23,493,479 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrig2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247728,809,443 - 8,868,282 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247728,809,226 - 8,873,614 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lrig2
1766 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1605
Count of miRNA genes:676
Interacting mature miRNAs:864
Transcripts:ENSMUST00000046316
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse

Markers in Region
UniSTS:234788  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383104,500,447 - 104,500,675UniSTSGRCm38
MGSCv373104,304,370 - 104,304,598UniSTSGRCm37
Celera3106,704,525 - 106,704,753UniSTS
Cytogenetic Map3F2.2UniSTS
Lrig2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F2.2UniSTS
cM Map3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC146300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY205369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD355189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK636907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN532345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000046316   ⟹   ENSMUSP00000035999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,361,296 - 104,419,156 (-)Ensembl
GRCm38.p6 Ensembl3104,453,980 - 104,511,840 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,364,662 - 104,419,234 (-)Ensembl
GRCm38.p6 Ensembl3104,457,346 - 104,511,918 (-)Ensembl
RefSeq Acc Id: ENSMUST00000197018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,366,523 - 104,370,139 (-)Ensembl
GRCm38.p6 Ensembl3104,459,207 - 104,462,823 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,388,591 - 104,418,977 (-)Ensembl
GRCm38.p6 Ensembl3104,481,275 - 104,511,661 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198332   ⟹   ENSMUSP00000142540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,364,444 - 104,419,172 (-)Ensembl
GRCm38.p6 Ensembl3104,457,128 - 104,511,856 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,397,710 - 104,398,747 (-)Ensembl
GRCm38.p6 Ensembl3104,490,394 - 104,491,431 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199070   ⟹   ENSMUSP00000142373
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,361,297 - 104,419,144 (-)Ensembl
GRCm38.p6 Ensembl3104,453,981 - 104,511,828 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199180   ⟹   ENSMUSP00000143406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,303,734 - 104,368,827 (-)Ensembl
GRCm38.p6 Ensembl3104,396,418 - 104,461,511 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,363,886 - 104,387,189 (-)Ensembl
GRCm38.p6 Ensembl3104,456,570 - 104,479,873 (-)Ensembl
RefSeq Acc Id: NM_001025067   ⟹   NP_001020238
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,361,299 - 104,419,234 (-)NCBI
GRCm383104,453,983 - 104,511,918 (-)NCBI
MGSCv373104,257,906 - 104,315,779 (-)RGD
Celera3106,657,999 - 106,716,082 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001310698   ⟹   NP_001297627
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,361,299 - 104,419,234 (-)NCBI
GRCm383104,453,983 - 104,511,918 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006501544   ⟹   XP_006501607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,363,153 - 104,383,526 (-)NCBI
GRCm383104,453,980 - 104,487,490 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319602   ⟹   XP_017175091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,361,296 - 104,383,526 (-)NCBI
GRCm383104,453,980 - 104,487,491 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252634   ⟹   XP_030108494
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,363,153 - 104,380,255 (-)NCBI
GRCm383104,453,980 - 104,476,017 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163127   ⟹   XP_036019020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,363,153 - 104,419,250 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941330
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,361,296 - 104,419,250 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941331
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,361,296 - 104,419,251 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001020238   ⟸   NM_001025067
- Peptide Label: isoform 1 precursor
- UniProtKB: Q69ZY8 (UniProtKB/Swiss-Prot),   Q52KR2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006501607   ⟸   XM_006501544
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017175091   ⟸   XM_017319602
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001297627   ⟸   NM_001310698
- Peptide Label: isoform 2 precursor
- UniProtKB: B2RRI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108494   ⟸   XM_030252634
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000142540   ⟸   ENSMUST00000198332
RefSeq Acc Id: ENSMUSP00000035999   ⟸   ENSMUST00000046316
RefSeq Acc Id: ENSMUSP00000142373   ⟸   ENSMUST00000199070
RefSeq Acc Id: ENSMUSP00000143406   ⟸   ENSMUST00000199180
RefSeq Acc Id: XP_036019020   ⟸   XM_036163127
- Peptide Label: isoform X1
Protein Domains
Ig-like   Ig-like C2-type   LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q52KR2-F1-model_v2 AlphaFold Q52KR2 1-1054 view protein structure

Promoters
RGD ID:6834056
Promoter ID:MM_KWN:35628
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK015736_4930509H03RIK,   ENSMUST00000106793,   NM_001025067,   UC008QUF.1,   UC008QUH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363104,315,261 - 104,316,132 (-)MPROMDB
RGD ID:6881898
Promoter ID:EPDNEW_M4400
Type:initiation region
Name:Lrig2_1
Description:Mus musculus leucine-rich repeats and immunoglobulin-like domains2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383104,511,887 - 104,511,947EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443718 AgrOrtholog
Ensembl Genes ENSMUSG00000032913 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000046316 ENTREZGENE
  ENSMUST00000046316.11 UniProtKB/Swiss-Prot
  ENSMUST00000198332 ENTREZGENE
  ENSMUST00000198332.2 UniProtKB/TrEMBL
  ENSMUST00000199070 ENTREZGENE
  ENSMUST00000199070.5 UniProtKB/Swiss-Prot
  ENSMUST00000199180.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:269473 UniProtKB/Swiss-Prot
MGD MGI:2443718 ENTREZGENE
NCBI Gene 269473 ENTREZGENE
PANTHER LEUCINE-RICH REPEATS AND IMMUNOGLOBULIN-LIKE DOMAINS PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTIC ADHESION-LIKE MOLECULE SALM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lrig2 PhenoGen
PRINTS LEURICHRPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_SD22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_TYP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JG33_MOUSE UniProtKB/TrEMBL
  B2RRI5 ENTREZGENE, UniProtKB/TrEMBL
  LRIG2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q69ZY8 ENTREZGENE
UniProt Secondary Q69ZY8 UniProtKB/Swiss-Prot