Rrp8 (ribosomal RNA processing 8) - Rat Genome Database

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Gene: Rrp8 (ribosomal RNA processing 8) Mus musculus
Analyze
Symbol: Rrp8
Name: ribosomal RNA processing 8
RGD ID: 1317996
MGI Page MGI
Description: Predicted to enable methylated histone binding activity. Predicted to be involved in several processes, including cellular response to glucose starvation; intrinsic apoptotic signaling pathway by p53 class mediator; and regulation of gene expression. Predicted to act upstream of with a negative effect on regulation of G1 to G0 transition. Predicted to act upstream of or within chromatin organization; methylation; and rRNA processing. Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Predicted to be part of eNoSc complex and rDNA heterochromatin. Predicted to be active in nucleolus. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system; and integumental system. Orthologous to human RRP8 (ribosomal RNA processing 8).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1500003O22Rik; 2900001K19Rik; AW538116; cerebral protein 1 homolog; NML; ribosomal RNA processing 8, methyltransferase, homolog; ribosomal RNA processing 8, methyltransferase, homolog (yeast); ribosomal RNA-processing protein 8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm17076  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397105,380,937 - 105,386,592 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7105,380,937 - 105,386,592 (-)EnsemblGRCm39 Ensembl
GRCm387105,731,730 - 105,737,385 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,731,730 - 105,737,385 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,880,723 - 112,885,014 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367105,606,030 - 105,610,321 (-)NCBIMGSCv36mm8
Celera7106,003,509 - 106,007,800 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.97NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22922362   PMID:24194600   PMID:24457600   PMID:24746822   PMID:27626380   PMID:28378742   PMID:29244083   PMID:38355793  


Genomics

Comparative Map Data
Rrp8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397105,380,937 - 105,386,592 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7105,380,937 - 105,386,592 (-)EnsemblGRCm39 Ensembl
GRCm387105,731,730 - 105,737,385 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,731,730 - 105,737,385 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,880,723 - 112,885,014 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367105,606,030 - 105,610,321 (-)NCBIMGSCv36mm8
Celera7106,003,509 - 106,007,800 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.97NCBI
RRP8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,595,072 - 6,603,616 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,595,072 - 6,603,616 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,616,302 - 6,624,846 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,577,728 - 6,581,387 (-)NCBINCBI36Build 36hg18NCBI36
Celera116,740,219 - 6,743,878 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef116,280,081 - 6,283,817 (-)NCBIHuRef
CHM1_1116,620,046 - 6,623,782 (-)NCBICHM1_1
T2T-CHM13v2.0116,653,543 - 6,662,088 (-)NCBIT2T-CHM13v2.0
Rrp8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,489,829 - 169,500,551 (-)NCBIGRCr8
mRatBN7.21160,081,092 - 160,088,709 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1160,084,295 - 160,089,331 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1168,107,178 - 168,111,204 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01175,293,176 - 175,297,202 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01168,194,934 - 168,198,960 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,574,670 - 170,578,693 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,574,349 - 170,579,616 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01177,580,522 - 177,584,545 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,477,028 - 163,481,051 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11163,572,506 - 163,576,528 (-)NCBI
Celera1158,016,713 - 158,020,738 (-)NCBICelera
Cytogenetic Map1q32NCBI
Rrp8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541422,311,038 - 22,316,144 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541422,311,038 - 22,316,144 (-)NCBIChiLan1.0ChiLan1.0
RRP8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v298,933,905 - 9,040,858 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,899,731 - 9,004,646 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,630,695 - 6,735,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,314,285 - 6,418,557 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,415,003 - 6,418,414 (-)Ensemblpanpan1.1panPan2
RRP8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,907,555 - 29,917,142 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,907,361 - 29,918,408 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,609,154 - 29,619,614 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02130,733,473 - 30,743,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2130,733,473 - 30,737,354 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12130,054,253 - 30,064,707 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02130,219,908 - 30,230,374 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02130,415,227 - 30,425,693 (-)NCBIUU_Cfam_GSD_1.0
Rrp8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494756,013,586 - 56,018,997 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936842657,727 - 661,757 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936842656,508 - 661,894 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RRP8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,152,209 - 3,162,540 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,152,162 - 3,169,380 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,810,391 - 3,814,833 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RRP8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,221,861 - 58,225,470 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,221,869 - 58,225,329 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038156,047,610 - 156,051,373 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rrp8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248178,092,664 - 8,096,358 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248178,089,320 - 8,096,447 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rrp8
72 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1030
Count of miRNA genes:442
Interacting mature miRNAs:534
Transcripts:ENSMUST00000033179, ENSMUST00000098148, ENSMUST00000127738, ENSMUST00000137902, ENSMUST00000148176, ENSMUST00000154852
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13464255Ifvrq2_minfluenza virus resistance QTL 2 (mouse)792500698106455693Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse

Markers in Region
AW538116  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387105,732,590 - 105,732,738UniSTSGRCm38
MGSCv377112,881,104 - 112,881,252UniSTSGRCm37
Celera7106,003,890 - 106,004,038UniSTS
Cytogenetic Map7E3UniSTS
Whitehead/MRC_RH71047.74UniSTS
UniSTS:224834  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387105,733,540 - 105,733,707UniSTSGRCm38
MGSCv377112,882,054 - 112,882,221UniSTSGRCm37
Celera7106,004,840 - 106,005,007UniSTS
Cytogenetic Map7E3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_025897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_378204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV460242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033179   ⟹   ENSMUSP00000033179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7105,380,937 - 105,385,988 (-)Ensembl
GRCm38.p6 Ensembl7105,731,730 - 105,736,781 (-)Ensembl
RefSeq Acc Id: ENSMUST00000098148   ⟹   ENSMUSP00000095752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7105,381,611 - 105,386,592 (-)Ensembl
GRCm38.p6 Ensembl7105,732,404 - 105,737,385 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127738   ⟹   ENSMUSP00000147906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7105,382,213 - 105,383,270 (-)Ensembl
GRCm38.p6 Ensembl7105,733,006 - 105,734,063 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137902
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7105,383,899 - 105,385,580 (-)Ensembl
GRCm38.p6 Ensembl7105,734,692 - 105,736,373 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7105,381,847 - 105,382,888 (-)Ensembl
GRCm38.p6 Ensembl7105,732,640 - 105,733,681 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7105,382,213 - 105,383,153 (-)Ensembl
GRCm38.p6 Ensembl7105,733,006 - 105,733,946 (-)Ensembl
RefSeq Acc Id: NM_025897   ⟹   NP_080173
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397105,380,937 - 105,385,791 (-)NCBI
GRCm387105,731,730 - 105,736,584 (-)NCBI
MGSCv377112,880,723 - 112,885,014 (-)RGD
Celera7106,003,030 - 106,008,685 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133951   ⟹   NP_598712
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397105,380,937 - 105,386,592 (-)NCBI
GRCm387105,731,730 - 105,737,385 (-)ENTREZGENE
Celera7106,003,030 - 106,008,685 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_378204
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397105,381,414 - 105,385,723 (-)NCBI
GRCm387105,732,207 - 105,736,579 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080173   ⟸   NM_025897
- Peptide Label: isoform 2
- UniProtKB: Q3U3A5 (UniProtKB/Swiss-Prot),   Q3TDD7 (UniProtKB/Swiss-Prot),   Q3T9X9 (UniProtKB/Swiss-Prot),   Q8BHW3 (UniProtKB/Swiss-Prot),   Q9DB85 (UniProtKB/Swiss-Prot),   Q3U4B0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_598712   ⟸   NM_133951
- Peptide Label: isoform 1
- UniProtKB: E9PVA2 (UniProtKB/TrEMBL),   Q3U4B0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000147906   ⟸   ENSMUST00000127738
RefSeq Acc Id: ENSMUSP00000033179   ⟸   ENSMUST00000033179
RefSeq Acc Id: ENSMUSP00000095752   ⟸   ENSMUST00000098148

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DB85-F1-model_v2 AlphaFold Q9DB85 1-457 view protein structure

Promoters
RGD ID:8665129
Promoter ID:EPDNEW_M10596
Type:initiation region
Name:Rrp8_1
Description:Mus musculus ribosomal RNA processing 8, methyltransferase, homolog, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10598  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387105,736,507 - 105,736,567EPDNEW
RGD ID:8665133
Promoter ID:EPDNEW_M10598
Type:initiation region
Name:Rrp8_2
Description:Mus musculus ribosomal RNA processing 8, methyltransferase, homolog, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10596  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387105,737,377 - 105,737,437EPDNEW
RGD ID:6840391
Promoter ID:MM_KWN:52103
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000062966,   OTTMUST00000062968,   UC009IZA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367112,884,861 - 112,886,877 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914251 AgrOrtholog
Ensembl Genes ENSMUSG00000030888 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033179 ENTREZGENE
  ENSMUST00000033179.14 UniProtKB/Swiss-Prot
  ENSMUST00000098148 ENTREZGENE
  ENSMUST00000098148.6 UniProtKB/TrEMBL
  ENSMUST00000127738.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RRP8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRP8_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UbiE/COQ5_MeTrFase_CS UniProtKB/TrEMBL
KEGG Report mmu:101867 UniProtKB/Swiss-Prot
MGD MGI:1914251 ENTREZGENE
NCBI Gene 101867 ENTREZGENE
PANTHER PTHR12787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOMAL RNA-PROCESSING PROTEIN 8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Methyltransf_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rrp8 PhenoGen
PROSITE UBIE_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GSE7_MOUSE UniProtKB/TrEMBL
  E9PVA2 ENTREZGENE, UniProtKB/TrEMBL
  Q3T9X9 ENTREZGENE
  Q3TDD7 ENTREZGENE
  Q3U3A5 ENTREZGENE
  Q3U4B0 ENTREZGENE, UniProtKB/TrEMBL
  Q8BHW3 ENTREZGENE
  Q9DB85 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3T9X9 UniProtKB/Swiss-Prot
  Q3TDD7 UniProtKB/Swiss-Prot
  Q3U3A5 UniProtKB/Swiss-Prot
  Q8BHW3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-09-01 Rrp8  ribosomal RNA processing 8  Rrp8  ribosomal RNA processing 8, methyltransferase, homolog (yeast)  Symbol and/or name change 5135510 APPROVED