AW209491 (expressed sequence AW209491) - Rat Genome Database

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Gene: AW209491 (expressed sequence AW209491) Mus musculus
Analyze
Symbol: AW209491
Name: expressed sequence AW209491
RGD ID: 1317753
MGI Page MGI
Description: Orthologous to human C7orf25 (chromosome 7 open reading frame 25).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC105351; UPF0415 protein C7orf25 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391314,804,830 - 14,812,787 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1314,804,739 - 14,813,681 (+)EnsemblGRCm39 Ensembl
GRCm381314,630,245 - 14,638,202 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1314,630,154 - 14,639,096 (+)EnsemblGRCm38mm10GRCm38
MGSCv371314,722,512 - 14,730,469 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361314,422,403 - 14,431,222 (+)NCBIMGSCv36mm8
Celera1314,936,524 - 14,944,233 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:32325033  


Genomics

Comparative Map Data
AW209491
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391314,804,830 - 14,812,787 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1314,804,739 - 14,813,681 (+)EnsemblGRCm39 Ensembl
GRCm381314,630,245 - 14,638,202 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1314,630,154 - 14,639,096 (+)EnsemblGRCm38mm10GRCm38
MGSCv371314,722,512 - 14,730,469 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361314,422,403 - 14,431,222 (+)NCBIMGSCv36mm8
Celera1314,936,524 - 14,944,233 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.36NCBI
C7orf25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38742,909,273 - 42,912,070 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl742,909,273 - 42,912,305 (-)EnsemblGRCh38hg38GRCh38
GRCh37742,948,872 - 42,951,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36742,915,397 - 42,918,214 (-)NCBINCBI36Build 36hg18NCBI36
Build 34742,722,113 - 42,724,897NCBI
Celera742,939,193 - 42,942,010 (-)NCBICelera
Cytogenetic Map7p14.1NCBI
HuRef742,833,689 - 42,836,506 (-)NCBIHuRef
CHM1_1742,952,434 - 42,955,251 (-)NCBICHM1_1
T2T-CHM13v2.0743,067,417 - 43,070,214 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2742,988,383 - 42,991,200 (-)NCBI
C17h7orf25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81755,238,751 - 55,245,399 (-)NCBIGRCr8
mRatBN7.21750,543,231 - 50,549,880 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1750,542,858 - 50,549,976 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1753,716,099 - 53,722,777 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01757,719,017 - 57,725,695 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01751,820,131 - 51,826,812 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01753,080,629 - 53,087,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1753,080,638 - 53,087,274 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01750,780,388 - 50,787,041 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41758,724,997 - 58,731,637 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11758,727,841 - 58,734,478 (-)NCBI
Celera1746,575,732 - 46,582,398 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
CUNH7orf25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955460894,516 - 898,445 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955460895,201 - 897,703 (+)NCBIChiLan1.0ChiLan1.0
C6H7orf25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2645,523,432 - 45,526,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1793,847,993 - 93,851,639 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0741,324,323 - 41,328,636 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1741,368,264 - 41,371,626 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl741,368,665 - 41,371,626 (+)Ensemblpanpan1.1panPan2
C18H7orf25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1187,232,823 - 7,236,830 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl187,234,687 - 7,235,952 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha187,083,673 - 7,087,747 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0187,279,771 - 7,283,856 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl187,280,224 - 7,283,854 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1187,262,813 - 7,266,876 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0187,232,071 - 7,236,142 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0187,344,869 - 7,348,942 (+)NCBIUU_Cfam_GSD_1.0
CUNH7orf25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511898,864,831 - 98,871,901 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647818,076,572 - 18,079,310 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647818,076,562 - 18,079,316 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C18H7orf25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1851,924,280 - 51,928,145 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11851,924,285 - 51,928,154 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21856,949,181 - 56,953,045 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH7orf25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12115,691,880 - 15,694,682 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660626,794,059 - 6,797,036 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH7orf25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474018,246,616 - 18,249,074 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474018,246,617 - 18,249,056 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AW209491
131 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:256
Count of miRNA genes:102
Interacting mature miRNAs:116
Transcripts:ENSMUST00000038690, ENSMUST00000178289
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301890Adip7_madiposity 7 (mouse)Not determined13123454672Mouse
1301227Skull19_mskull morphology 19 (mouse)Not determined13123454672Mouse
1301661Tshp13_mtooth shape 13 (mouse)Not determined13123454672Mouse
1301255Cd4ts6_mCD4 T cell subset 6 (mouse)Not determined1316854534168684Mouse
10449140Eosn2_meosinophil differential 2 (mouse)1322131134221311Mouse
15039338Nmrs34_mNAFLD-associated magnetic resonance shift 34 (mouse)1322131134221311Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13347761237477820Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13347761237477820Mouse
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13347761237477820Mouse
1301367Twq1_mtestis weight QTL 1 (mouse)Not determined13361551237615672Mouse
1301733Heal3_mwound healing/regeneration 3 (mouse)Not determined13368020037680343Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse

Markers in Region
AW209491  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381314,638,024 - 14,638,111UniSTSGRCm38
MGSCv371314,730,291 - 14,730,378UniSTSGRCm37
Celera1314,944,055 - 14,944,142UniSTS
Cytogenetic Map13A1UniSTS
Whitehead/MRC_RH13216.03UniSTS
144K13-F  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381314,637,701 - 14,637,815UniSTSGRCm38
MGSCv371314,729,968 - 14,730,082UniSTSGRCm37
Celera1314,943,732 - 14,943,846UniSTS
Cytogenetic Map13A1UniSTS
cM Map138.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000038690   ⟹   ENSMUSP00000041523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1314,804,833 - 14,813,681 (+)Ensembl
GRCm38.p6 Ensembl1314,630,248 - 14,639,096 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178289   ⟹   ENSMUSP00000136376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1314,804,739 - 14,812,788 (+)Ensembl
GRCm38.p6 Ensembl1314,630,154 - 14,638,203 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222052   ⟹   ENSMUSP00000152180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1314,804,862 - 14,811,499 (+)Ensembl
GRCm38.p6 Ensembl1314,630,277 - 14,636,914 (+)Ensembl
RefSeq Acc Id: NM_001104646   ⟹   NP_001098116
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391314,804,830 - 14,812,787 (+)NCBI
GRCm381314,630,245 - 14,638,202 (+)ENTREZGENE
MGSCv371314,722,512 - 14,730,469 (+)RGD
Celera1314,936,524 - 14,944,233 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_134067   ⟹   NP_598828
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391314,804,843 - 14,812,787 (+)NCBI
GRCm381314,630,258 - 14,638,202 (+)NCBI
MGSCv371314,722,512 - 14,730,469 (+)RGD
Celera1314,936,524 - 14,944,233 (+)RGD
cM Map13 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_598828   ⟸   NM_134067
- UniProtKB: Q8BP59 (UniProtKB/Swiss-Prot),   Q8BSU5 (UniProtKB/Swiss-Prot),   Q91WD4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001098116   ⟸   NM_001104646
- UniProtKB: Q8BP59 (UniProtKB/Swiss-Prot),   Q8BSU5 (UniProtKB/Swiss-Prot),   Q91WD4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136376   ⟸   ENSMUST00000178289
RefSeq Acc Id: ENSMUSP00000152180   ⟸   ENSMUST00000222052
RefSeq Acc Id: ENSMUSP00000041523   ⟸   ENSMUST00000038690
Protein Domains
DUF5614

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91WD4-F1-model_v2 AlphaFold Q91WD4 1-421 view protein structure

Promoters
RGD ID:8679668
Promoter ID:EPDNEW_M17845
Type:initiation region
Name:AW209491_1
Description:Mus musculus expressed sequence AW209491 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381314,630,277 - 14,630,337EPDNEW
RGD ID:6823716
Promoter ID:MM_KWN:13283
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC007PNM.1,   UC007PNN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361314,722,279 - 14,722,779 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2145422 AgrOrtholog
Ensembl Genes ENSMUSG00000039182 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038690 ENTREZGENE
  ENSMUST00000038690.6 UniProtKB/Swiss-Prot
  ENSMUST00000178289 ENTREZGENE
  ENSMUST00000178289.3 UniProtKB/Swiss-Prot
  ENSMUST00000222052.2 UniProtKB/TrEMBL
InterPro DUF1308 UniProtKB/Swiss-Prot
  DUF5614 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:105351 UniProtKB/Swiss-Prot
MGD MGI:2145422 ENTREZGENE
NCBI Gene 105351 ENTREZGENE
PANTHER UNCHARACTERIZED DUF1308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UPF0415 PROTEIN C7ORF25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1308 UniProtKB/Swiss-Prot
  DUF5614 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen AW209491 PhenoGen
UniProt A0A1Y7VLG8_MOUSE UniProtKB/TrEMBL
  CG025_MOUSE UniProtKB/Swiss-Prot
  Q8BP59 ENTREZGENE
  Q8BSU5 ENTREZGENE
  Q91WD4 ENTREZGENE
UniProt Secondary Q8BP59 UniProtKB/Swiss-Prot
  Q8BSU5 UniProtKB/Swiss-Prot