Phykpl (5-phosphohydroxy-L-lysine phospholyase) - Rat Genome Database

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Gene: Phykpl (5-phosphohydroxy-L-lysine phospholyase) Mus musculus
Analyze
Symbol: Phykpl
Name: 5-phosphohydroxy-L-lysine phospholyase
RGD ID: 1317661
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Located in mitochondrion. Orthologous to human PHYKPL (5-phosphohydroxy-L-lysine phospho-lyase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900006B13Rik; 5-phosphohydroxy-L-lysine phospho-lyase; Agxt2; Agxt2l2; alanine--glyoxylate aminotransferase 2-like 2; alanine-glyoxylate aminotransferase 2-like 2; RP23-79E13.3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,474,751 - 51,494,091 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,475,584 - 51,495,316 (+)EnsemblGRCm39 Ensembl
GRCm381151,584,654 - 51,603,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,584,757 - 51,604,489 (+)EnsemblGRCm38mm10GRCm38
MGSCv371151,398,259 - 51,416,771 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361151,428,226 - 51,446,460 (+)NCBIMGSCv36mm8
Celera1156,156,087 - 56,174,597 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18614015   PMID:18799693   PMID:21677750  
PMID:21873635   PMID:26449520  


Genomics

Comparative Map Data
Phykpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,474,751 - 51,494,091 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,475,584 - 51,495,316 (+)EnsemblGRCm39 Ensembl
GRCm381151,584,654 - 51,603,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,584,757 - 51,604,489 (+)EnsemblGRCm38mm10GRCm38
MGSCv371151,398,259 - 51,416,771 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361151,428,226 - 51,446,460 (+)NCBIMGSCv36mm8
Celera1156,156,087 - 56,174,597 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.08NCBI
PHYKPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385178,207,144 - 178,232,822 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5178,208,471 - 178,232,802 (-)EnsemblGRCh38hg38GRCh38
GRCh375177,635,472 - 177,659,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365177,568,196 - 177,592,392 (-)NCBINCBI36Build 36hg18NCBI36
Celera5173,262,527 - 173,286,791 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5172,361,764 - 172,386,111 (-)NCBIHuRef
CHM1_15177,067,898 - 177,092,260 (-)NCBICHM1_1
T2T-CHM13v2.05178,758,757 - 178,783,105 (-)NCBIT2T-CHM13v2.0
Phykpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81036,340,905 - 36,372,555 (+)NCBIGRCr8
mRatBN7.21035,839,965 - 35,863,631 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1035,839,983 - 35,859,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1040,534,492 - 40,551,956 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01040,024,784 - 40,042,248 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01035,528,191 - 35,545,657 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,938,661 - 34,960,661 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,938,667 - 34,960,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01036,804,284 - 36,826,629 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41037,100,238 - 37,117,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1035,196,736 - 35,214,241 (+)NCBICelera
Cytogenetic Map10q22NCBI
Phykpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,038,169 - 2,060,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,038,168 - 2,062,681 (+)NCBIChiLan1.0ChiLan1.0
PHYKPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24173,150,709 - 173,176,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15171,293,532 - 171,316,242 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05173,368,383 - 173,394,377 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15180,625,530 - 180,651,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5180,625,530 - 180,651,618 (-)Ensemblpanpan1.1panPan2
PHYKPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1113,324,035 - 3,358,070 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl113,323,722 - 3,358,063 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha113,467,553 - 3,502,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0113,300,232 - 3,335,214 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl113,300,207 - 3,334,260 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1113,270,668 - 3,305,644 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0113,351,973 - 3,386,962 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0113,590,559 - 3,625,548 (+)NCBIUU_Cfam_GSD_1.0
Phykpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213113,455,212 - 113,478,355 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936647458,052 - 478,747 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936647456,633 - 480,711 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHYKPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,142,033 - 80,191,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,142,273 - 80,188,753 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2281,754,503 - 81,800,963 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHYKPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,900,615 - 79,926,879 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2379,898,807 - 79,926,305 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607511,199,321 - 11,226,259 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phykpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473341,398,602 - 41,425,649 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473341,402,276 - 41,425,635 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Phykpl
678 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1883
Count of miRNA genes:732
Interacting mature miRNAs:954
Transcripts:ENSMUST00000020625, ENSMUST00000101250, ENSMUST00000109105, ENSMUST00000156128, ENSMUST00000164864, ENSMUST00000167797, ENSMUST00000169823, ENSMUST00000169995
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4141770Tcpm1_mT-cell phenotype modifier 1 (mouse)Not determined5145247953615930Mouse

Markers in Region
AI585872  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381151,596,741 - 51,596,869UniSTSGRCm38
MGSCv371151,410,243 - 51,410,371UniSTSGRCm37
Celera1156,168,073 - 56,168,201UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11702.33UniSTS
AI429655  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381151,583,575 - 51,583,709UniSTSGRCm38
MGSCv371151,397,077 - 51,397,211UniSTSGRCm37
Celera1156,154,905 - 56,155,039UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11702.23UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001382821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_168564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK013489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020625   ⟹   ENSMUSP00000020625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,475,616 - 51,492,155 (+)Ensembl
GRCm38.p6 Ensembl1151,584,789 - 51,601,328 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101250   ⟹   ENSMUSP00000098808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,475,584 - 51,494,081 (+)Ensembl
GRCm38.p6 Ensembl1151,584,757 - 51,603,254 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,475,638 - 51,484,133 (+)Ensembl
GRCm38.p6 Ensembl1151,584,811 - 51,593,306 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,475,630 - 51,487,837 (+)Ensembl
GRCm38.p6 Ensembl1151,584,803 - 51,597,010 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,475,634 - 51,478,144 (+)Ensembl
GRCm38.p6 Ensembl1151,584,807 - 51,587,317 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167797   ⟹   ENSMUSP00000132190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,475,584 - 51,495,316 (+)Ensembl
GRCm38.p6 Ensembl1151,584,757 - 51,604,489 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,482,274 - 51,484,708 (+)Ensembl
GRCm38.p6 Ensembl1151,591,447 - 51,593,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,490,094 - 51,491,894 (+)Ensembl
GRCm38.p6 Ensembl1151,599,267 - 51,601,067 (+)Ensembl
RefSeq Acc Id: NM_001382821   ⟹   NP_001369750
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,475,608 - 51,492,159 (+)NCBI
GRCm381151,584,781 - 51,601,332 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028398   ⟹   NP_082674
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,475,608 - 51,494,091 (+)NCBI
GRCm381151,584,781 - 51,603,264 (+)NCBI
MGSCv371151,398,259 - 51,416,771 (+)RGD
Celera1156,156,087 - 56,174,597 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_168564
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,475,608 - 51,494,091 (+)NCBI
GRCm381151,584,781 - 51,603,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534323   ⟹   XP_006534386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,474,751 - 51,492,113 (+)NCBI
GRCm381151,584,654 - 51,601,068 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534324   ⟹   XP_006534387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,474,751 - 51,492,113 (+)NCBI
GRCm381151,584,654 - 51,601,068 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534325   ⟹   XP_006534388
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,474,751 - 51,494,091 (+)NCBI
GRCm381151,584,654 - 51,603,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157020   ⟹   XP_036012913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,474,751 - 51,494,091 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937049
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,474,751 - 51,494,091 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_082674   ⟸   NM_028398
- Peptide Label: isoform 2
- UniProtKB: Q3TUU9 (UniProtKB/Swiss-Prot),   Q8BG04 (UniProtKB/Swiss-Prot),   Q8R1K4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534388   ⟸   XM_006534325
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006534386   ⟸   XM_006534323
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006534387   ⟸   XM_006534324
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001369750   ⟸   NM_001382821
- Peptide Label: isoform 1
RefSeq Acc Id: ENSMUSP00000020625   ⟸   ENSMUST00000020625
RefSeq Acc Id: ENSMUSP00000098808   ⟸   ENSMUST00000101250
RefSeq Acc Id: ENSMUSP00000132190   ⟸   ENSMUST00000167797
RefSeq Acc Id: XP_036012913   ⟸   XM_036157020
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R1K4-F1-model_v2 AlphaFold Q8R1K4 1-467 view protein structure

Promoters
RGD ID:6820302
Promoter ID:MM_KWN:7308
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_028398,   OTTMUST00000012470,   UC007ITW.1,   UC007ITX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361151,398,081 - 51,398,707 (+)MPROMDB
RGD ID:6846811
Promoter ID:MM_ACW:7379
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   Brain,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6
Transcripts:AGXT2L2.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361151,414,561 - 51,415,061 (+)MPROMDB
RGD ID:8674546
Promoter ID:EPDNEW_M15303
Type:multiple initiation site
Name:Phykpl_1
Description:Mus musculus 5-phosphohydroxy-L-lysine phospholyase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381151,584,787 - 51,584,847EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920197 AgrOrtholog
Ensembl Genes ENSMUSG00000020359 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020625 ENTREZGENE
  ENSMUST00000020625.7 UniProtKB/Swiss-Prot
  ENSMUST00000101250.12 UniProtKB/TrEMBL
  ENSMUST00000167797 ENTREZGENE
  ENSMUST00000167797.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.640.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aminotrans_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotrans_3_PPA_site UniProtKB/Swiss-Prot
  PyrdxlP-dep_Trfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_dom1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72947 UniProtKB/Swiss-Prot
MGD MGI:1920197 ENTREZGENE
NCBI Gene 72947 ENTREZGENE
PANTHER 5-PHOSPHOHYDROXY-L-LYSINE PHOSPHO-LYASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45688 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aminotran_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Phykpl PhenoGen
PIRSF Transaminase_4ab_Lys_Orn UniProtKB/Swiss-Prot
PROSITE AA_TRANSFER_CLASS_3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt AT2L2_MOUSE UniProtKB/Swiss-Prot
  F8WHK6_MOUSE UniProtKB/TrEMBL
  Q3TUU9 ENTREZGENE
  Q8BG04 ENTREZGENE
  Q8R1K4 ENTREZGENE
UniProt Secondary Q3TUU9 UniProtKB/Swiss-Prot
  Q8BG04 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-02 Phykpl  5-phosphohydroxy-L-lysine phospholyase  Agxt2l2  alanine-glyoxylate aminotransferase 2-like 2  Symbol and/or name change 5135510 APPROVED