Rrp9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein) - Rat Genome Database

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Gene: Rrp9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein) Mus musculus
Analyze
Symbol: Rrp9
Name: ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
RGD ID: 1317333
MGI Page MGI
Description: Predicted to enable U3 snoRNA binding activity. Predicted to be involved in rRNA processing and ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex and small-subunit processome. Is expressed in embryo and extraembryonic component. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 55kD; 55kDa; D19435; D9Wsu10; D9Wsu10e; MGC25949; RNA, U3 small nucleolar interacting protein 2; Rnu; Rnu3ip2; RRP9 homolog; RRP9, small subunit (SSU) processome component, homolog; RRP9, small subunit (SSU) processome component, homolog (yeast); U3 small nucleolar ribonucleoprotein-associated 55 kDa protein; U3 small nucleolar RNA-interacting protein 2; U3 snoRNP-associated 55 kDa protein; U3 snoRNP-associated 55-kDa protein; U3 snoRNP-associated protein; U3-55k
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,354,508 - 106,362,614 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,353,162 - 106,362,623 (+)EnsemblGRCm39 Ensembl
GRCm389106,477,309 - 106,485,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,475,963 - 106,485,424 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,379,640 - 106,387,746 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,335,410 - 106,343,516 (+)NCBIMGSCv36mm8
Celera9106,104,204 - 106,112,359 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11487633   PMID:12448766   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15761153   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22922362   PMID:24457600   PMID:26336360   PMID:30196744  


Genomics

Comparative Map Data
Rrp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,354,508 - 106,362,614 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,353,162 - 106,362,623 (+)EnsemblGRCm39 Ensembl
GRCm389106,477,309 - 106,485,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,475,963 - 106,485,424 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,379,640 - 106,387,746 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,335,410 - 106,343,516 (+)NCBIMGSCv36mm8
Celera9106,104,204 - 106,112,359 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.59NCBI
RRP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,933,429 - 51,941,904 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,933,429 - 51,941,904 (-)EnsemblGRCh38hg38GRCh38
GRCh37351,967,445 - 51,975,920 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,942,486 - 51,950,962 (-)NCBINCBI36Build 36hg18NCBI36
Build 34351,942,485 - 51,950,962NCBI
Celera351,946,271 - 51,954,747 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef352,030,781 - 52,039,295 (-)NCBIHuRef
CHM1_1351,920,131 - 51,928,646 (-)NCBICHM1_1
T2T-CHM13v2.0351,966,348 - 51,974,823 (-)NCBIT2T-CHM13v2.0
Rrp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88115,995,119 - 116,004,832 (+)NCBIGRCr8
mRatBN7.28107,116,411 - 107,126,123 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,117,471 - 107,126,123 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,740,433 - 112,749,088 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,939,609 - 110,948,264 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,782,391 - 108,791,046 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,179,899 - 115,188,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,179,893 - 115,188,588 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,544,186 - 114,552,838 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,621,968 - 111,630,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18111,641,420 - 111,650,409 (+)NCBI
Celera8106,429,368 - 106,438,021 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rrp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,581,417 - 3,591,271 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,584,111 - 3,591,234 (-)NCBIChiLan1.0ChiLan1.0
RRP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,927,786 - 51,936,644 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,932,556 - 51,941,415 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,874,829 - 51,883,339 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,103,621 - 53,112,127 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,103,621 - 53,112,127 (-)Ensemblpanpan1.1panPan2
RRP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,774,477 - 37,785,203 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,774,516 - 37,784,191 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,755,970 - 37,764,232 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,125,083 - 38,133,349 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,125,042 - 38,134,431 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,488,685 - 37,496,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,897,438 - 37,905,679 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,182,533 - 38,190,801 (+)NCBIUU_Cfam_GSD_1.0
Rrp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,521,494 - 66,530,586 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365293,282,032 - 3,291,192 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365293,281,991 - 3,291,049 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RRP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,067,520 - 34,075,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,067,517 - 34,075,425 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,264,060 - 37,271,970 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RRP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,301,525 - 13,310,132 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,300,799 - 13,310,137 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,625,044 - 153,633,654 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rrp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247305,747,573 - 5,761,456 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247305,752,201 - 5,761,501 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rrp9
227 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:994
Count of miRNA genes:497
Interacting mature miRNAs:591
Transcripts:ENSMUST00000047721, ENSMUST00000123464, ENSMUST00000125630, ENSMUST00000127400, ENSMUST00000131618, ENSMUST00000156796
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse

Markers in Region
UniSTS:224257  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,485,335 - 106,485,409UniSTSGRCm38
MGSCv379106,387,666 - 106,387,740UniSTSGRCm37
Celera9106,112,279 - 106,112,353UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS
RH125696  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,485,075 - 106,485,353UniSTSGRCm38
MGSCv379106,387,406 - 106,387,684UniSTSGRCm37
Celera9106,112,019 - 106,112,297UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS
Whitehead/MRC_RH91099.71UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000047721   ⟹   ENSMUSP00000038580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9106,354,468 - 106,362,623 (+)Ensembl
GRCm38.p6 Ensembl9106,477,269 - 106,485,424 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9106,353,162 - 106,359,072 (+)Ensembl
GRCm38.p6 Ensembl9106,475,963 - 106,481,873 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9106,354,517 - 106,362,615 (+)Ensembl
GRCm38.p6 Ensembl9106,477,318 - 106,485,416 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9106,354,529 - 106,355,188 (+)Ensembl
GRCm38.p6 Ensembl9106,477,330 - 106,477,989 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9106,361,663 - 106,362,623 (+)Ensembl
GRCm38.p6 Ensembl9106,484,464 - 106,485,424 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156796
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9106,357,999 - 106,358,848 (+)Ensembl
GRCm38.p6 Ensembl9106,480,800 - 106,481,649 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185336   ⟹   ENSMUSP00000140949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9106,361,053 - 106,362,621 (+)Ensembl
GRCm38.p6 Ensembl9106,483,854 - 106,485,422 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9106,354,924 - 106,360,396 (+)Ensembl
GRCm38.p6 Ensembl9106,477,725 - 106,483,197 (+)Ensembl
RefSeq Acc Id: NM_145620   ⟹   NP_663595
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,354,508 - 106,362,614 (+)NCBI
GRCm389106,477,309 - 106,485,415 (+)NCBI
MGSCv379106,379,640 - 106,387,746 (+)RGD
Celera9106,104,204 - 106,112,359 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_663595   ⟸   NM_145620
- UniProtKB: Q8CFB7 (UniProtKB/Swiss-Prot),   Q91WM3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000140949   ⟸   ENSMUST00000185336
RefSeq Acc Id: ENSMUSP00000038580   ⟸   ENSMUST00000047721

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91WM3-F1-model_v2 AlphaFold Q91WM3 1-475 view protein structure

Promoters
RGD ID:6845106
Promoter ID:MM_KWN:58674
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:OTTMUST00000084577
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369106,377,521 - 106,378,021 (+)MPROMDB
RGD ID:6844087
Promoter ID:MM_KWN:58675
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000112479,   OTTMUST00000084574,   OTTMUST00000084575,   OTTMUST00000084576,   OTTMUST00000084583,   OTTMUST00000084585,   OTTMUST00000084587,   OTTMUST00000084588,   OTTMUST00000084589,   UC009RJX.1,   UC009RKA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369106,378,521 - 106,379,732 (-)MPROMDB
RGD ID:6845108
Promoter ID:MM_KWN:58676
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000084578
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369106,381,901 - 106,382,401 (+)MPROMDB
RGD ID:8670740
Promoter ID:EPDNEW_M13401
Type:initiation region
Name:Rrp9_1
Description:Mus musculus RRP9, small subunit processome component, homolog, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389106,477,321 - 106,477,381EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384313 AgrOrtholog
Ensembl Genes ENSMUSG00000041506 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047721 ENTREZGENE
  ENSMUST00000047721.10 UniProtKB/Swiss-Prot
  ENSMUST00000185336.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
InterPro G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot
  Rrp9-like UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:27966 UniProtKB/Swiss-Prot
MGD MGI:2384313 ENTREZGENE
NCBI Gene 27966 ENTREZGENE
PANTHER PTHR19865 UniProtKB/Swiss-Prot
  U3 SMALL NUCLEOLAR RNA-INTERACTING PROTEIN 2 UniProtKB/Swiss-Prot
Pfam WD40 UniProtKB/Swiss-Prot
PhenoGen Rrp9 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A0A087WS95_MOUSE UniProtKB/TrEMBL
  Q8CFB7 ENTREZGENE
  Q91WM3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8CFB7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-09-01 Rrp9  ribosomal RNA processing 9, U3 small nucleolar RNA binding protein  Rrp9  RRP9, small subunit (SSU) processome component, homolog (yeast)  Symbol and/or name change 5135510 APPROVED