Extl2 (exostosin-like glycosyltransferase 2) - Rat Genome Database

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Gene: Extl2 (exostosin-like glycosyltransferase 2) Mus musculus
Analyze
Symbol: Extl2
Name: exostosin-like glycosyltransferase 2
RGD ID: 1317016
MGI Page MGI
Description: Enables acetylgalactosaminyltransferase activity; glycosaminoglycan binding activity; and manganese ion binding activity. Involved in N-acetylglucosamine metabolic process and UDP-N-acetylgalactosamine metabolic process. Predicted to be located in cytosol; endoplasmic reticulum; and nucleoplasm. Is expressed in several structures, including central nervous system; genitourinary system; liver; lung; and spleen. Orthologous to human EXTL2 (exostosin like glycosyltransferase 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3000001D04Rik; alpha-1,4-N-acetylhexosaminyltransferase EXTL2; alpha-GalNAcT EXTL2; AW146439; exostoses (multiple)-like 2; exostoses-like 2; exostosin-like 2; exotoses (multiple)-like 2; EXT-related protein 2; glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393115,801,083 - 115,822,666 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3115,801,111 - 115,822,666 (+)EnsemblGRCm39 Ensembl
GRCm383116,007,449 - 116,029,017 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,007,462 - 116,029,017 (+)EnsemblGRCm38mm10GRCm38
MGSCv373115,710,367 - 115,731,934 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363115,999,481 - 116,020,876 (+)NCBIMGSCv36mm8
Celera3122,431,903 - 122,453,472 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10965119   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12562774   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:23395820   PMID:23734945   PMID:24176719   PMID:29305908   PMID:30228991   PMID:32347583   PMID:32703234  


Genomics

Comparative Map Data
Extl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393115,801,083 - 115,822,666 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3115,801,111 - 115,822,666 (+)EnsemblGRCm39 Ensembl
GRCm383116,007,449 - 116,029,017 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,007,462 - 116,029,017 (+)EnsemblGRCm38mm10GRCm38
MGSCv373115,710,367 - 115,731,934 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363115,999,481 - 116,020,876 (+)NCBIMGSCv36mm8
Celera3122,431,903 - 122,453,472 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.17NCBI
EXTL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,872,372 - 100,895,179 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,872,372 - 100,895,179 (-)EnsemblGRCh38hg38GRCh38
GRCh371101,337,928 - 101,360,735 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361101,110,529 - 101,133,006 (-)NCBINCBI36Build 36hg18NCBI36
Build 341101,049,964 - 101,072,389NCBI
Celera199,599,599 - 99,622,103 (-)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef199,463,021 - 99,485,834 (-)NCBIHuRef
CHM1_11101,454,067 - 101,476,874 (-)NCBICHM1_1
T2T-CHM13v2.01100,721,212 - 100,744,883 (-)NCBIT2T-CHM13v2.0
Extl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82206,607,106 - 206,631,861 (+)NCBIGRCr8
mRatBN7.22203,922,217 - 203,946,940 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2203,922,187 - 203,943,653 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2211,579,396 - 211,599,847 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02209,469,978 - 209,490,418 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,287,007 - 204,307,447 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02218,951,112 - 218,972,576 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2218,951,141 - 218,971,886 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02237,037,162 - 237,058,891 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42212,163,317 - 212,183,756 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12212,140,748 - 212,146,596 (+)NCBI
Celera2196,423,452 - 196,443,884 (+)NCBICelera
Cytogenetic Map2q42NCBI
Extl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554355,509,648 - 5,531,458 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554355,509,648 - 5,527,751 (-)NCBIChiLan1.0ChiLan1.0
EXTL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,133,179 - 126,156,805 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11125,291,276 - 125,314,912 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01103,528,962 - 103,552,575 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11102,242,291 - 102,265,898 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1102,242,291 - 102,265,898 (-)Ensemblpanpan1.1panPan2
EXTL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,233,266 - 49,252,568 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,232,596 - 49,250,945 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha651,902,938 - 51,923,586 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0649,576,666 - 49,597,346 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl649,578,255 - 49,597,342 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1649,269,599 - 49,290,481 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0649,249,164 - 49,270,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0649,679,045 - 49,699,947 (+)NCBIUU_Cfam_GSD_1.0
Extl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058111,085,664 - 111,105,038 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748890,779 - 907,156 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936748890,821 - 910,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXTL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4117,396,615 - 117,420,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14117,396,601 - 117,420,707 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24128,940,641 - 128,961,883 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EXTL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12032,458,114 - 32,480,820 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2032,475,297 - 32,479,266 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603825,589,570 - 25,612,275 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Extl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248573,733,845 - 3,754,159 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248573,736,984 - 3,757,209 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Extl2
828 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1671
Count of miRNA genes:508
Interacting mature miRNAs:617
Transcripts:ENSMUST00000029575, ENSMUST00000106501, ENSMUST00000106502, ENSMUST00000128228, ENSMUST00000145945, ENSMUST00000149920
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse

Markers in Region
Extl2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv373115,726,850 - 115,727,436UniSTSGRCm37
MGSCv373115,730,462 - 115,730,624UniSTSGRCm37
Celera3122,448,390 - 122,448,976UniSTS
Celera3122,451,999 - 122,452,161UniSTS
Cytogenetic Map3G1UniSTS
cM Map3 UniSTS
AW146439  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383116,028,647 - 116,028,775UniSTSGRCm38
MGSCv373115,731,565 - 115,731,693UniSTSGRCm37
Celera3122,453,103 - 122,453,231UniSTS
Cytogenetic Map3G1UniSTS
Whitehead/MRC_RH31355.06UniSTS
UniSTS:225236  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383116,022,568 - 116,022,669UniSTSGRCm38
MGSCv373115,725,486 - 115,725,587UniSTSGRCm37
Celera3122,447,026 - 122,447,127UniSTS
Cytogenetic Map3G1UniSTS
Extl2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383116,023,932 - 116,024,518UniSTSGRCm38
MGSCv373115,726,850 - 115,727,436UniSTSGRCm37
Celera3122,448,390 - 122,448,976UniSTS
Cytogenetic Map3G1UniSTS
cM Map3 UniSTS
Extl2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383116,027,544 - 116,027,706UniSTSGRCm38
MGSCv373115,730,462 - 115,730,624UniSTSGRCm37
Celera3122,451,999 - 122,452,161UniSTS
Cytogenetic Map3G1UniSTS
cM Map3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB032170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB032171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC108909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF200973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG694725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY251302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029575   ⟹   ENSMUSP00000029575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3115,801,111 - 115,822,666 (+)Ensembl
GRCm38.p6 Ensembl3116,007,462 - 116,029,017 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106501   ⟹   ENSMUSP00000102110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3115,801,127 - 115,822,644 (+)Ensembl
GRCm38.p6 Ensembl3116,007,478 - 116,028,995 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106502   ⟹   ENSMUSP00000102111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3115,801,869 - 115,822,609 (+)Ensembl
GRCm38.p6 Ensembl3116,008,220 - 116,028,960 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3115,801,134 - 115,802,145 (+)Ensembl
GRCm38.p6 Ensembl3116,007,485 - 116,008,496 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145945
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3115,801,172 - 115,817,762 (+)Ensembl
GRCm38.p6 Ensembl3116,007,523 - 116,024,113 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3115,801,477 - 115,804,514 (+)Ensembl
GRCm38.p6 Ensembl3116,007,828 - 116,010,865 (+)Ensembl
RefSeq Acc Id: NM_001163514   ⟹   NP_001156986
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393115,801,946 - 115,822,665 (+)NCBI
GRCm383116,008,297 - 116,029,016 (+)NCBI
MGSCv373115,710,367 - 115,731,934 (+)RGD
Celera3122,431,903 - 122,453,472 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001163515   ⟹   NP_001156987
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393115,801,098 - 115,822,665 (+)NCBI
GRCm383116,007,449 - 116,029,016 (+)NCBI
MGSCv373115,710,367 - 115,731,934 (+)RGD
Celera3122,431,903 - 122,453,472 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_021388   ⟹   NP_067363
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393115,801,098 - 115,822,665 (+)NCBI
GRCm383116,007,449 - 116,029,016 (+)NCBI
MGSCv373115,710,367 - 115,731,934 (+)RGD
Celera3122,431,903 - 122,453,472 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011240177   ⟹   XP_011238479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393115,801,083 - 115,822,666 (+)NCBI
GRCm383116,007,452 - 116,029,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319674   ⟹   XP_017175163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393115,801,874 - 115,822,666 (+)NCBI
GRCm383116,008,209 - 116,029,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252739   ⟹   XP_030108599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393115,801,101 - 115,822,666 (+)NCBI
GRCm383116,007,452 - 116,029,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163198   ⟹   XP_036019091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393115,801,874 - 115,822,666 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_067363   ⟸   NM_021388
- Peptide Label: isoform a
- UniProtKB: Q505Q8 (UniProtKB/Swiss-Prot),   Q9CX90 (UniProtKB/Swiss-Prot),   Q9ES89 (UniProtKB/Swiss-Prot),   Q3TXF7 (UniProtKB/TrEMBL),   Q8C197 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001156987   ⟸   NM_001163515
- Peptide Label: isoform b
- UniProtKB: Q3TSR0 (UniProtKB/TrEMBL),   K0J1C6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001156986   ⟸   NM_001163514
- Peptide Label: isoform a
- UniProtKB: Q505Q8 (UniProtKB/Swiss-Prot),   Q9CX90 (UniProtKB/Swiss-Prot),   Q9ES89 (UniProtKB/Swiss-Prot),   Q3TXF7 (UniProtKB/TrEMBL),   Q8C197 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011238479   ⟸   XM_011240177
- Peptide Label: isoform X1
- UniProtKB: K0J1C6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017175163   ⟸   XM_017319674
- Peptide Label: isoform X1
- UniProtKB: K0J1C6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108599   ⟸   XM_030252739
- Peptide Label: isoform X2
- UniProtKB: Q3TSR0 (UniProtKB/TrEMBL),   K0J1C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000029575   ⟸   ENSMUST00000029575
RefSeq Acc Id: ENSMUSP00000102111   ⟸   ENSMUST00000106502
RefSeq Acc Id: ENSMUSP00000102110   ⟸   ENSMUST00000106501
RefSeq Acc Id: XP_036019091   ⟸   XM_036163198
- Peptide Label: isoform X2
- UniProtKB: Q3TSR0 (UniProtKB/TrEMBL),   K0J1C6 (UniProtKB/TrEMBL)
Protein Domains
Glycosyl transferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ES89-F1-model_v2 AlphaFold Q9ES89 1-330 view protein structure

Promoters
RGD ID:6833756
Promoter ID:MM_KWN:35882
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000106502,   NM_001163515,   NM_021388,   NM_023214,   OTTMUST00000054231,   OTTMUST00000054232,   OTTMUST00000054233
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363115,710,116 - 115,711,412 (+)MPROMDB
RGD ID:6882162
Promoter ID:EPDNEW_M4532
Type:initiation region
Name:Extl2_2
Description:Mus musculus exostoses -like 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4533  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383116,007,485 - 116,007,545EPDNEW
RGD ID:6882164
Promoter ID:EPDNEW_M4533
Type:initiation region
Name:Extl2_1
Description:Mus musculus exostoses -like 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4532  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383116,008,336 - 116,008,396EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1889574 AgrOrtholog
Ensembl Genes ENSMUSG00000027963 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029575 ENTREZGENE
  ENSMUST00000029575.12 UniProtKB/Swiss-Prot
  ENSMUST00000106501 ENTREZGENE
  ENSMUST00000106501.8 UniProtKB/TrEMBL
  ENSMUST00000106502 ENTREZGENE
  ENSMUST00000106502.2 UniProtKB/Swiss-Prot
InterPro GT64 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:58193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1889574 ENTREZGENE
NCBI Gene 58193 ENTREZGENE
PANTHER EXOSTOSIN-LIKE 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNTHASE CPS1, PUTATIVE (AFU_ORTHOLOGUE AFUA_7G02500)-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_64 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Extl2 PhenoGen
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt EXTL2_MOUSE UniProtKB/Swiss-Prot
  K0J1C6 ENTREZGENE, UniProtKB/TrEMBL
  Q3TSR0 ENTREZGENE, UniProtKB/TrEMBL
  Q3TXF7 ENTREZGENE, UniProtKB/TrEMBL
  Q505Q8 ENTREZGENE
  Q8C089_MOUSE UniProtKB/TrEMBL
  Q8C197 ENTREZGENE, UniProtKB/TrEMBL
  Q9CX90 ENTREZGENE
  Q9ES89 ENTREZGENE
UniProt Secondary Q505Q8 UniProtKB/Swiss-Prot
  Q9CX90 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-10 Extl2  exostosin-like glycosyltransferase 2  Extl2  exostoses (multiple)-like 2  Symbol and/or name change 5135510 APPROVED