C2cd3 (C2 calcium-dependent domain containing 3) - Rat Genome Database

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Gene: C2cd3 (C2 calcium-dependent domain containing 3) Mus musculus
Analyze
Symbol: C2cd3
Name: C2 calcium-dependent domain containing 3
RGD ID: 1316524
MGI Page MGI
Description: Involved in centriole elongation. Acts upstream of or within several processes, including chordate embryonic development; embryonic morphogenesis; and protein localization to centrosome. Located in centriolar satellite; centriole; and ciliary basal body. Is expressed in several structures, including alimentary system mesenchyme; brain; face; oral epithelium; and perichondrium. Human ortholog(s) of this gene implicated in orofaciodigital syndrome. Orthologous to human C2CD3 (C2 domain containing 3 centriole elongation regulator).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU020772; C2 domain-containing protein 3; protein hearty
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,021,440 - 100,119,366 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7100,021,440 - 100,119,359 (+)EnsemblGRCm39 Ensembl
GRCm387100,372,229 - 100,470,159 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7100,372,233 - 100,470,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv377107,520,743 - 107,618,668 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367100,248,501 - 100,344,232 (+)NCBIMGSCv36mm8
Celera7100,709,229 - 100,807,748 (+)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell projection  (IEA)
centriolar satellite  (IBA,IDA,ISO)
centriole  (IBA,IDA,ISO)
centrosome  (ISO)
ciliary basal body  (IDA)
cilium  (IEA)
cytoplasm  (IEA)
cytoskeleton  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15971254   PMID:16141072  
PMID:16141073   PMID:16964442   PMID:18799693   PMID:19004860   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24469809   PMID:24997988   PMID:31138677   PMID:34211969  


Genomics

Comparative Map Data
C2cd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,021,440 - 100,119,366 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7100,021,440 - 100,119,359 (+)EnsemblGRCm39 Ensembl
GRCm387100,372,229 - 100,470,159 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7100,372,233 - 100,470,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv377107,520,743 - 107,618,668 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367100,248,501 - 100,344,232 (+)NCBIMGSCv36mm8
Celera7100,709,229 - 100,807,748 (+)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.35NCBI
C2CD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381174,012,718 - 74,171,002 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1174,012,718 - 74,171,210 (-)EnsemblGRCh38hg38GRCh38
GRCh371173,723,763 - 73,882,047 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,423,128 - 73,559,712 (-)NCBINCBI36Build 36hg18NCBI36
Celera1171,052,284 - 71,188,859 (-)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1170,041,381 - 70,177,322 (-)NCBIHuRef
CHM1_11173,629,333 - 73,766,320 (-)NCBICHM1_1
T2T-CHM13v2.01173,942,048 - 74,100,346 (-)NCBIT2T-CHM13v2.0
C2cd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81164,127,304 - 164,225,088 (+)NCBIGRCr8
mRatBN7.21154,715,151 - 154,812,955 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1154,715,310 - 154,812,520 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1162,709,885 - 162,807,531 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01169,889,987 - 169,987,632 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,763,942 - 162,861,529 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01165,382,279 - 165,480,088 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1165,382,690 - 165,479,655 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01171,583,008 - 171,680,742 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,774,397 - 157,892,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11157,853,000 - 157,955,514 (+)NCBI
Celera1152,799,056 - 152,895,063 (+)NCBICelera
Cytogenetic Map1q32NCBI
C2cd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541417,444,515 - 17,558,245 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541417,444,299 - 17,557,912 (+)NCBIChiLan1.0ChiLan1.0
C2CD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2974,954,310 - 75,113,879 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11175,998,226 - 76,157,932 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01169,085,434 - 69,244,791 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11172,392,606 - 72,551,620 (-)NCBIpanpan1.1PanPan1.1panPan2
UCP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12124,272,522 - 24,290,304 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2124,277,896 - 24,288,639 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2124,049,763 - 24,055,700 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02124,484,075 - 24,496,484 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2124,484,070 - 24,496,484 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12124,284,466 - 24,290,404 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02124,484,328 - 24,490,265 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02124,399,875 - 24,405,814 (+)NCBIUU_Cfam_GSD_1.0
C2cd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494761,499,810 - 61,642,747 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364983,099,396 - 3,242,335 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364983,099,419 - 3,242,334 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2CD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl98,393,612 - 8,512,848 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.198,393,610 - 8,512,843 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.299,289,856 - 9,349,672 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C2CD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,282,311 - 65,436,007 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl165,282,318 - 65,435,834 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604360,428,341 - 60,584,199 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C2cd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248172,880,976 - 3,042,004 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248172,880,775 - 3,060,399 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C2cd3
3198 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2879
Count of miRNA genes:852
Interacting mature miRNAs:1191
Transcripts:ENSMUST00000051777, ENSMUST00000098259, ENSMUST00000119647, ENSMUST00000120196, ENSMUST00000133464, ENSMUST00000151573, ENSMUST00000156559, ENSMUST00000184657, ENSMUST00000184753, ENSMUST00000184779, ENSMUST00000185051, ENSMUST00000185084
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13464255Ifvrq2_minfluenza virus resistance QTL 2 (mouse)792500698106455693Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse

Markers in Region
RH136566  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387100,469,754 - 100,469,948UniSTSGRCm38
MGSCv377107,618,263 - 107,618,457UniSTSGRCm37
Celera7100,807,343 - 100,807,537UniSTS
Cytogenetic Map7E3UniSTS
AA960618  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387100,468,269 - 100,468,388UniSTSGRCm38
MGSCv377107,616,778 - 107,616,897UniSTSGRCm37
Celera7100,805,858 - 100,805,977UniSTS
Cytogenetic Map7E3UniSTS
Whitehead/MRC_RH71021.56UniSTS
AU020772  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387100,469,658 - 100,469,963UniSTSGRCm38
MGSCv377107,618,167 - 107,618,472UniSTSGRCm37
Celera7100,807,247 - 100,807,552UniSTS
Cytogenetic Map7E3UniSTS
cM Map7 UniSTS
UniSTS:235718  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387100,454,715 - 100,455,102UniSTSGRCm38
MGSCv377107,603,225 - 107,603,612UniSTSGRCm37
Celera7100,792,335 - 100,792,722UniSTS
Cytogenetic Map7E3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001017985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC151839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG073635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY300398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ173453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000051777   ⟹   ENSMUSP00000062637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,021,440 - 100,119,357 (+)Ensembl
GRCm38.p6 Ensembl7100,372,233 - 100,470,150 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098259   ⟹   ENSMUSP00000095859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,021,440 - 100,118,668 (+)Ensembl
GRCm38.p6 Ensembl7100,372,233 - 100,469,461 (+)Ensembl
RefSeq Acc Id: ENSMUST00000119647   ⟹   ENSMUSP00000113360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,045,006 - 100,103,648 (+)Ensembl
GRCm38.p6 Ensembl7100,395,799 - 100,454,441 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120196   ⟹   ENSMUSP00000113728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,079,357 - 100,119,359 (+)Ensembl
GRCm38.p6 Ensembl7100,430,150 - 100,470,152 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133464   ⟹   ENSMUSP00000118864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,021,453 - 100,072,561 (+)Ensembl
GRCm38.p6 Ensembl7100,372,246 - 100,423,354 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151573
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,113,418 - 100,119,359 (+)Ensembl
GRCm38.p6 Ensembl7100,464,211 - 100,470,152 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,021,488 - 100,056,399 (+)Ensembl
GRCm38.p6 Ensembl7100,372,281 - 100,407,192 (+)Ensembl
RefSeq Acc Id: ENSMUST00000184657
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,100,545 - 100,103,996 (+)Ensembl
GRCm38.p6 Ensembl7100,451,338 - 100,454,789 (+)Ensembl
RefSeq Acc Id: ENSMUST00000184753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,069,712 - 100,072,287 (+)Ensembl
GRCm38.p6 Ensembl7100,420,505 - 100,423,080 (+)Ensembl
RefSeq Acc Id: ENSMUST00000184779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,092,560 - 100,093,963 (+)Ensembl
GRCm38.p6 Ensembl7100,443,353 - 100,444,756 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,078,329 - 100,081,502 (+)Ensembl
GRCm38.p6 Ensembl7100,429,122 - 100,432,295 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185084   ⟹   ENSMUSP00000139071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,098,012 - 100,104,037 (+)Ensembl
GRCm38.p6 Ensembl7100,448,805 - 100,454,830 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,114,614 - 100,119,359 (+)Ensembl
GRCm38.p6 Ensembl7100,465,407 - 100,470,152 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,046,238 - 100,065,564 (+)Ensembl
GRCm38.p6 Ensembl7100,397,031 - 100,416,357 (+)Ensembl
RefSeq Acc Id: NM_001017985   ⟹   NP_001017985
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,021,440 - 100,119,366 (+)NCBI
GRCm387100,372,233 - 100,470,159 (+)ENTREZGENE
MGSCv377107,520,743 - 107,618,668 (+)RGD
Celera7100,709,229 - 100,807,748 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507908   ⟹   XP_006507971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,021,611 - 100,119,359 (+)NCBI
GRCm387100,372,360 - 100,470,152 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241827   ⟹   XP_011240129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,021,617 - 100,119,359 (+)NCBI
GRCm387100,372,360 - 100,470,152 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242643   ⟹   XP_030098503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,021,564 - 100,119,359 (+)NCBI
GRCm387100,372,360 - 100,470,152 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242644   ⟹   XP_030098504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,021,440 - 100,103,662 (+)NCBI
GRCm387100,372,229 - 100,454,455 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242645   ⟹   XP_030098505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,021,617 - 100,119,359 (+)NCBI
GRCm387100,372,292 - 100,470,152 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242646   ⟹   XP_030098506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,021,611 - 100,119,359 (+)NCBI
GRCm387100,372,360 - 100,470,152 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003946487
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,021,440 - 100,119,359 (+)NCBI
GRCm387100,372,229 - 100,470,152 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001017985   ⟸   NM_001017985
- UniProtKB: Q80V48 (UniProtKB/Swiss-Prot),   Q3UFQ3 (UniProtKB/Swiss-Prot),   E9QL99 (UniProtKB/Swiss-Prot),   Q8BXE5 (UniProtKB/Swiss-Prot),   Q52KB6 (UniProtKB/Swiss-Prot),   E9Q526 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507971   ⟸   XM_006507908
- Peptide Label: isoform X1
- UniProtKB: E9Q526 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240129   ⟸   XM_011241827
- Peptide Label: isoform X1
- UniProtKB: E9Q526 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030098504   ⟸   XM_030242644
- Peptide Label: isoform X2
- UniProtKB: E9Q526 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030098505   ⟸   XM_030242645
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030098506   ⟸   XM_030242646
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030098503   ⟸   XM_030242643
- Peptide Label: isoform X1
- UniProtKB: E9Q526 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000113360   ⟸   ENSMUST00000119647
RefSeq Acc Id: ENSMUSP00000062637   ⟸   ENSMUST00000051777
RefSeq Acc Id: ENSMUSP00000118864   ⟸   ENSMUST00000133464
RefSeq Acc Id: ENSMUSP00000139071   ⟸   ENSMUST00000185084
RefSeq Acc Id: ENSMUSP00000113728   ⟸   ENSMUST00000120196
RefSeq Acc Id: ENSMUSP00000095859   ⟸   ENSMUST00000098259
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q52KB6-F1-model_v2 AlphaFold Q52KB6 1-2323 view protein structure

Promoters
RGD ID:8664915
Promoter ID:EPDNEW_M10489
Type:initiation region
Name:C2cd3_1
Description:Mus musculus C2 calcium-dependent domain containing 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387100,372,233 - 100,372,293EPDNEW
RGD ID:6840683
Promoter ID:MM_KWN:51710
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000051777,   ENSMUST00000098259,   NM_001017985,   NM_028292,   OTTMUST00000078946,   UC009IMV.1,   UC009IMW.1,   UC009IMX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367107,520,316 - 107,521,167 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2142166 AgrOrtholog
Ensembl Genes ENSMUSG00000047248 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051777 ENTREZGENE
  ENSMUST00000051777.15 UniProtKB/Swiss-Prot
  ENSMUST00000098259 ENTREZGENE
  ENSMUST00000098259.11 UniProtKB/TrEMBL
  ENSMUST00000119647.9 UniProtKB/TrEMBL
  ENSMUST00000120196.9 UniProtKB/TrEMBL
  ENSMUST00000133464.8 UniProtKB/TrEMBL
  ENSMUST00000185084.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_C2CD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:277939 UniProtKB/Swiss-Prot
MGD MGI:2142166 ENTREZGENE
NCBI Gene 277939 ENTREZGENE
PANTHER C2 DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen C2cd3 PhenoGen
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C2CD3_MOUSE UniProtKB/Swiss-Prot
  D3Z4D9_MOUSE UniProtKB/TrEMBL
  D3Z640_MOUSE UniProtKB/TrEMBL
  D6RH58_MOUSE UniProtKB/TrEMBL
  E9Q526 ENTREZGENE, UniProtKB/TrEMBL
  E9QL99 ENTREZGENE
  Q3TSB8_MOUSE UniProtKB/TrEMBL
  Q3UFQ3 ENTREZGENE
  Q52KB6 ENTREZGENE
  Q80V48 ENTREZGENE
  Q8BXE5 ENTREZGENE
  V9GXB2_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9QL99 UniProtKB/Swiss-Prot
  Q3UFQ3 UniProtKB/Swiss-Prot
  Q80V48 UniProtKB/Swiss-Prot
  Q8BXE5 UniProtKB/Swiss-Prot