Lrrc57 (leucine rich repeat containing 57) - Rat Genome Database

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Gene: Lrrc57 (leucine rich repeat containing 57) Mus musculus
Analyze
Symbol: Lrrc57
Name: leucine rich repeat containing 57
RGD ID: 1316138
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human LRRC57 (leucine rich repeat containing 57).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810002D13Rik; AA407405; leucine-rich repeat-containing protein 57
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,434,719 - 120,439,989 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,434,719 - 120,440,001 (-)EnsemblGRCm39 Ensembl
GRCm382120,604,238 - 120,609,508 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,604,238 - 120,609,520 (-)EnsemblGRCm38mm10GRCm38
MGSCv372120,429,974 - 120,435,244 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,295,679 - 120,300,715 (-)NCBIMGSCv36mm8
Celera2121,757,029 - 121,762,300 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16602821   PMID:21267068   PMID:21873635   PMID:32968282  
PMID:38187761  


Genomics

Comparative Map Data
Lrrc57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,434,719 - 120,439,989 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,434,719 - 120,440,001 (-)EnsemblGRCm39 Ensembl
GRCm382120,604,238 - 120,609,508 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,604,238 - 120,609,520 (-)EnsemblGRCm38mm10GRCm38
MGSCv372120,429,974 - 120,435,244 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,295,679 - 120,300,715 (-)NCBIMGSCv36mm8
Celera2121,757,029 - 121,762,300 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
LRRC57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381542,528,327 - 42,548,793 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1542,537,820 - 42,548,802 (-)EnsemblGRCh38hg38GRCh38
GRCh371542,830,027 - 42,840,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,622,014 - 40,628,292 (-)NCBINCBI36Build 36hg18NCBI36
Celera1519,602,426 - 19,608,708 (-)NCBICelera
Cytogenetic Map15q15.2NCBI
HuRef1519,682,473 - 19,688,755 (-)NCBIHuRef
CHM1_11542,953,162 - 42,959,444 (-)NCBICHM1_1
T2T-CHM13v2.01540,334,371 - 40,354,843 (-)NCBIT2T-CHM13v2.0
Lrrc57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,998,535 - 128,007,004 (-)NCBIGRCr8
mRatBN7.23107,544,786 - 107,553,256 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,547,405 - 107,553,256 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3111,222,226 - 111,228,070 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03119,817,799 - 119,823,643 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03117,478,192 - 117,484,036 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03112,365,936 - 112,371,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,365,938 - 112,385,528 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,370,057 - 112,371,664 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,912,832 - 118,918,683 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43107,365,961 - 107,371,816 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13107,262,390 - 107,268,061 (-)NCBI
Celera3106,454,979 - 106,460,831 (-)NCBICelera
Cytogenetic Map3q35NCBI
Lrrc57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554169,230,362 - 9,237,799 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554169,230,362 - 9,237,799 (-)NCBIChiLan1.0ChiLan1.0
LRRC57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,788,619 - 31,799,619 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,945,583 - 35,956,606 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01521,499,139 - 21,510,154 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,659,381 - 39,666,068 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,659,387 - 39,666,068 (-)Ensemblpanpan1.1panPan2
LRRC57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,497,328 - 9,502,235 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,554,594 - 9,559,683 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,632,152 - 9,637,242 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,632,159 - 9,637,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1309,551,416 - 9,556,506 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,657,980 - 9,663,060 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,790,695 - 9,795,782 (-)NCBIUU_Cfam_GSD_1.0
Lrrc57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,974,785 - 87,978,759 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364715,820,579 - 5,827,084 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364715,822,165 - 5,826,894 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1128,839,204 - 128,847,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11128,839,137 - 128,845,749 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21143,731,688 - 143,738,556 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,427,588 - 40,434,108 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,427,887 - 40,432,553 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048100,578,130 - 100,584,784 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrc57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248049,648,956 - 9,656,754 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248049,648,956 - 9,656,464 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lrrc57
150 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2562
Count of miRNA genes:558
Interacting mature miRNAs:640
Transcripts:ENSMUST00000102496, ENSMUST00000102497, ENSMUST00000102498, ENSMUST00000102499, ENSMUST00000133612, ENSMUST00000135465, ENSMUST00000141932
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112024987128173821Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112024987128173821Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
13506762Tbvq2_mtrabecular bone volume QTL 2 (mouse)2115430481124741920Mouse
1558825Aabpr_maberrant activation of B cell proliferation (mouse)Not determined2116033229122207534Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12904007Cfq7_mconditioned fear QTL 7 (mouse)2118356772125048872Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse

Markers in Region
RH125685  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382120,604,299 - 120,604,539UniSTSGRCm38
MGSCv372120,430,035 - 120,430,275UniSTSGRCm37
Celera2121,757,090 - 121,757,330UniSTS
Cytogenetic Map2E5UniSTS
Whitehead/MRC_RH21524.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_027510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK003037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU604191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY081522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY293050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ169080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000102496   ⟹   ENSMUSP00000099554
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2120,434,719 - 120,439,796 (-)Ensembl
GRCm38.p6 Ensembl2120,604,238 - 120,609,315 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102497   ⟹   ENSMUSP00000099555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2120,434,719 - 120,439,836 (-)Ensembl
GRCm38.p6 Ensembl2120,604,238 - 120,609,355 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102498   ⟹   ENSMUSP00000099556
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2120,434,719 - 120,439,991 (-)Ensembl
GRCm38.p6 Ensembl2120,604,238 - 120,609,510 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102499   ⟹   ENSMUSP00000099557
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2120,434,719 - 120,440,001 (-)Ensembl
GRCm38.p6 Ensembl2120,604,238 - 120,609,520 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133612   ⟹   ENSMUSP00000121638
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2120,436,451 - 120,439,989 (-)Ensembl
GRCm38.p6 Ensembl2120,605,970 - 120,609,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135465   ⟹   ENSMUSP00000117895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2120,435,300 - 120,438,453 (-)Ensembl
GRCm38.p6 Ensembl2120,604,819 - 120,607,972 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141932
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2120,439,299 - 120,439,783 (-)Ensembl
GRCm38.p6 Ensembl2120,608,818 - 120,609,302 (-)Ensembl
RefSeq Acc Id: NM_001159609   ⟹   NP_001153081
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392120,434,719 - 120,439,989 (-)NCBI
GRCm382120,604,238 - 120,609,508 (-)ENTREZGENE
MGSCv372120,429,974 - 120,435,244 (-)RGD
Celera2121,757,029 - 121,762,300 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159610   ⟹   NP_001153082
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392120,434,719 - 120,439,989 (-)NCBI
GRCm382120,604,238 - 120,609,508 (-)ENTREZGENE
MGSCv372120,429,974 - 120,435,244 (-)RGD
Celera2121,757,029 - 121,762,300 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159612   ⟹   NP_001153084
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392120,434,719 - 120,439,839 (-)NCBI
GRCm382120,604,238 - 120,609,358 (-)NCBI
MGSCv372120,429,974 - 120,435,244 (-)RGD
Celera2121,757,029 - 121,762,300 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_025657   ⟹   NP_079933
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392120,434,719 - 120,439,796 (-)NCBI
GRCm382120,604,238 - 120,609,315 (-)NCBI
MGSCv372120,429,974 - 120,435,244 (-)RGD
Celera2121,757,029 - 121,762,300 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_027510
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392120,434,719 - 120,439,989 (-)NCBI
GRCm382120,604,238 - 120,609,508 (-)ENTREZGENE
MGSCv372120,429,974 - 120,435,244 (-)RGD
Celera2121,757,029 - 121,762,300 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500016   ⟹   XP_006500079
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392120,434,719 - 120,439,695 (-)NCBI
GRCm382120,604,238 - 120,609,214 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004940692
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392120,434,719 - 120,439,887 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_079933   ⟸   NM_025657
- Peptide Label: isoform c
- UniProtKB: Q9DC95 (UniProtKB/Swiss-Prot),   Q9D1G5 (UniProtKB/Swiss-Prot),   Q8JZX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153081   ⟸   NM_001159609
- Peptide Label: isoform b
- UniProtKB: Q9DC95 (UniProtKB/Swiss-Prot),   Q9D1G5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153082   ⟸   NM_001159610
- Peptide Label: isoform a
- UniProtKB: Q9DC95 (UniProtKB/Swiss-Prot),   Q9D1G5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153084   ⟸   NM_001159612
- Peptide Label: isoform c
- UniProtKB: Q9DC95 (UniProtKB/Swiss-Prot),   Q9D1G5 (UniProtKB/Swiss-Prot),   Q8JZX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500079   ⟸   XM_006500016
- Peptide Label: isoform X1
- UniProtKB: Q9DC95 (UniProtKB/Swiss-Prot),   Q9D1G5 (UniProtKB/Swiss-Prot),   Q8JZX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000117895   ⟸   ENSMUST00000135465
RefSeq Acc Id: ENSMUSP00000121638   ⟸   ENSMUST00000133612
RefSeq Acc Id: ENSMUSP00000099557   ⟸   ENSMUST00000102499
RefSeq Acc Id: ENSMUSP00000099556   ⟸   ENSMUST00000102498
RefSeq Acc Id: ENSMUSP00000099555   ⟸   ENSMUST00000102497
RefSeq Acc Id: ENSMUSP00000099554   ⟸   ENSMUST00000102496

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D1G5-F1-model_v2 AlphaFold Q9D1G5 1-239 view protein structure

Promoters
RGD ID:6831737
Promoter ID:MM_KWN:31331
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney,   Lung
Transcripts:OTTMUST00000037132
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362120,433,436 - 120,433,936 (-)MPROMDB
RGD ID:6831736
Promoter ID:MM_KWN:31332
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000090011,   ENSMUST00000102496,   ENSMUST00000102498,   ENSMUST00000102499,   OTTMUST00000037127,   OTTMUST00000037130,   OTTMUST00000037131,   UC008LWM.1,   UC008LWN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362120,434,799 - 120,435,299 (-)MPROMDB
RGD ID:6878426
Promoter ID:EPDNEW_M2664
Type:initiation region
Name:Lrrc57_1
Description:Mus musculus leucine rich repeat containing 57 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2666  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382120,609,355 - 120,609,415EPDNEW
RGD ID:6878430
Promoter ID:EPDNEW_M2666
Type:multiple initiation site
Name:Lrrc57_2
Description:Mus musculus leucine rich repeat containing 57 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2664  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382120,609,508 - 120,609,568EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913856 AgrOrtholog
Ensembl Genes ENSMUSG00000027286 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000102496 ENTREZGENE
  ENSMUST00000102496.8 UniProtKB/TrEMBL
  ENSMUST00000102497 ENTREZGENE
  ENSMUST00000102497.10 UniProtKB/TrEMBL
  ENSMUST00000102498.8 UniProtKB/TrEMBL
  ENSMUST00000102499.8 UniProtKB/TrEMBL
  ENSMUST00000133612.2 UniProtKB/TrEMBL
  ENSMUST00000135465.2 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66606 UniProtKB/TrEMBL
MGD MGI:1913856 ENTREZGENE
NCBI Gene 66606 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47-LIKE PROTEIN UniProtKB/TrEMBL
  NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR48051 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LRR_1 UniProtKB/TrEMBL
  LRR_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lrrc57 PhenoGen
PRINTS LEURICHRPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_TYP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Outer arm dynein light chain 1 UniProtKB/TrEMBL
UniProt A2AKH7_MOUSE UniProtKB/TrEMBL
  B0R031_MOUSE UniProtKB/TrEMBL
  LRC57_MOUSE UniProtKB/Swiss-Prot
  Q8JZX5 ENTREZGENE, UniProtKB/TrEMBL
  Q9CSK4_MOUSE UniProtKB/TrEMBL
  Q9CTX7_MOUSE UniProtKB/TrEMBL
  Q9D1G5 ENTREZGENE
  Q9DC95 ENTREZGENE
UniProt Secondary Q9DC95 UniProtKB/Swiss-Prot