Gpr39 (G protein-coupled receptor 39) - Rat Genome Database

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Gene: Gpr39 (G protein-coupled receptor 39) Mus musculus
Analyze
Symbol: Gpr39
Name: G protein-coupled receptor 39
RGD ID: 1315540
MGI Page MGI
Description: Enables G protein-coupled receptor activity. Acts upstream of or within several processes, including adult feeding behavior; cellular response to zinc ion; and regulation of secretion. Predicted to be located in plasma membrane. Orthologous to human GPR39 (G protein-coupled receptor 39).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933415E13Rik; G-protein coupled receptor 39
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391125,604,725 - 125,804,132 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1125,604,732 - 125,801,599 (+)EnsemblGRCm39 Ensembl
GRCm381125,676,996 - 125,873,862 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1125,676,995 - 125,873,862 (+)EnsemblGRCm38mm10GRCm38
MGSCv371127,573,573 - 127,770,439 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361127,504,883 - 127,505,830 (+)NCBIMGSCv36mm8
Celera1128,334,189 - 128,532,633 (+)NCBICelera
Cytogenetic Map1E3NCBI
cM Map154.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:12477932   PMID:12679517   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:17030183   PMID:17095592   PMID:17488974   PMID:17885920   PMID:18180304   PMID:18337590   PMID:18815158   PMID:19213833   PMID:19213841   PMID:21267068   PMID:21296392  
PMID:21470317   PMID:21784784   PMID:21873635   PMID:22441041   PMID:22545109   PMID:23089648   PMID:23133519   PMID:24333148   PMID:24967969   PMID:25562657   PMID:25604641   PMID:25609596  
PMID:25827929   PMID:25917396   PMID:26112416   PMID:26375174   PMID:26857489   PMID:27377730   PMID:27865419   PMID:28093242   PMID:29079520   PMID:29295862   PMID:30053407   PMID:31346193  
PMID:33554444   PMID:33711555   PMID:34288802   PMID:34390690   PMID:35357432   PMID:35385329   PMID:35875352   PMID:36087899   PMID:36181628   PMID:36574661   PMID:37716463   PMID:38049010  
PMID:38306436   PMID:38355793  


Genomics

Comparative Map Data
Gpr39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391125,604,725 - 125,804,132 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1125,604,732 - 125,801,599 (+)EnsemblGRCm39 Ensembl
GRCm381125,676,996 - 125,873,862 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1125,676,995 - 125,873,862 (+)EnsemblGRCm38mm10GRCm38
MGSCv371127,573,573 - 127,770,439 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361127,504,883 - 127,505,830 (+)NCBIMGSCv36mm8
Celera1128,334,189 - 128,532,633 (+)NCBICelera
Cytogenetic Map1E3NCBI
cM Map154.7NCBI
GPR39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382132,416,805 - 132,646,582 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2132,416,805 - 132,646,582 (+)EnsemblGRCh38hg38GRCh38
GRCh372133,174,378 - 133,404,155 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362132,890,617 - 133,120,639 (+)NCBINCBI36Build 36hg18NCBI36
Build 342133,008,347 - 133,236,911NCBI
Celera2126,889,417 - 127,119,426 (+)NCBICelera
Cytogenetic Map2q21.2NCBI
HuRef2125,167,784 - 125,397,791 (+)NCBIHuRef
CHM1_12133,179,388 - 133,409,402 (+)NCBICHM1_1
T2T-CHM13v2.02132,855,128 - 133,084,942 (+)NCBIT2T-CHM13v2.0
Gpr39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81339,667,908 - 39,879,944 (+)NCBIGRCr8
mRatBN7.21337,115,258 - 37,327,312 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1337,115,102 - 37,328,267 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1339,714,881 - 39,921,158 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01341,002,909 - 41,209,182 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01338,268,760 - 38,475,116 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01342,008,642 - 42,220,737 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1342,008,842 - 42,009,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01347,119,931 - 47,328,375 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41338,181,953 - 38,400,282 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11338,196,195 - 38,414,321 (+)NCBI
Celera1336,918,413 - 37,123,031 (+)NCBICelera
Cytogenetic Map13q12NCBI
Gpr39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544047,652 - 239,206 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544046,648 - 235,644 (+)NCBIChiLan1.0ChiLan1.0
LOC103782656
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21342,494,756 - 42,500,592 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B42,514,190 - 42,515,564 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B27,429,851 - 27,431,292 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B136,509,316 - 136,510,431 (+)NCBIpanpan1.1PanPan1.1panPan2
GPR39
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11935,385,835 - 35,585,953 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1935,385,829 - 35,586,507 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1935,617,325 - 35,815,657 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01936,821,160 - 37,020,836 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1936,821,312 - 37,021,482 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11935,468,606 - 35,669,165 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01935,630,016 - 35,829,194 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01936,849,888 - 37,048,076 (+)NCBIUU_Cfam_GSD_1.0
Gpr39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530385,643,574 - 85,645,151 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646955,972,948 - 56,169,227 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646955,973,001 - 55,974,070 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1519,557,893 - 19,799,040 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11519,556,066 - 19,801,203 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21522,134,237 - 22,135,040 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21522,412,380 - 22,413,403 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Gpr39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473231,801,512 - 32,045,229 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473231,801,512 - 32,045,271 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpr39
7861 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:488
Count of miRNA genes:321
Interacting mature miRNAs:377
Transcripts:ENSMUST00000027581, ENSMUST00000159359
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
1301123Cd8mts2_mCD8 memory T cell subset 2 (mouse)Not determined196618386130618557Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301753Tir3a_mtrypansomiasis infection response 3a (mouse)Not determined197053986131054190Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357760Synch3_msynechia 3 (mouse)Not determined192901442126901550Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
13452398Leusq5_mleucocytosis susceptibility QTL 5 (mouse)198474785126386517Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse

Markers in Region
MHAa67e10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,864,332 - 125,864,526UniSTSGRCm38
MGSCv371127,760,909 - 127,761,103UniSTSGRCm37
Celera1128,522,840 - 128,523,026UniSTS
Cytogenetic Map1E3UniSTS
Whitehead_YAC1 UniSTS
D1Mit93  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,685,026 - 125,685,154UniSTSGRCm38
MGSCv371127,581,603 - 127,581,731UniSTSGRCm37
Celera1128,342,806 - 128,342,932UniSTS
Cytogenetic Map1E3UniSTS
cM Map164.0UniSTS
Whitehead Genetic167.8UniSTS
Whitehead_YAC1 UniSTS
AI853363  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,867,708 - 125,867,849UniSTSGRCm38
MGSCv371127,764,285 - 127,764,426UniSTSGRCm37
Celera1128,526,482 - 128,526,623UniSTS
Cytogenetic Map1E3UniSTS
Whitehead/MRC_RH11654.32UniSTS
AI853408  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,872,336 - 125,872,452UniSTSGRCm38
MGSCv371127,768,913 - 127,769,029UniSTSGRCm37
Celera1128,531,108 - 128,531,224UniSTS
Cytogenetic Map1E3UniSTS
Whitehead/MRC_RH11653.59UniSTS
Gpr39  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,677,377 - 125,678,101UniSTSGRCm38
MGSCv371127,573,954 - 127,574,678UniSTSGRCm37
Celera1128,334,570 - 128,335,294UniSTS
Cytogenetic Map1E3UniSTS
cM Map1 UniSTS
AU048772  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381125,804,428 - 125,804,492UniSTSGRCm38
MGSCv371127,701,005 - 127,701,069UniSTSGRCm37
Celera1128,462,522 - 128,462,586UniSTS
Cytogenetic Map1E3UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000027581   ⟹   ENSMUSP00000027581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1125,604,732 - 125,801,599 (+)Ensembl
GRCm38.p6 Ensembl1125,676,995 - 125,873,862 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1125,767,740 - 125,800,910 (+)Ensembl
GRCm38.p6 Ensembl1125,840,003 - 125,873,173 (+)Ensembl
RefSeq Acc Id: NM_027677   ⟹   NP_081953
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391125,604,725 - 125,804,132 (+)NCBI
GRCm381125,676,996 - 125,873,862 (+)NCBI
MGSCv371127,573,573 - 127,770,439 (+)RGD
Celera1128,334,189 - 128,532,633 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_081953   ⟸   NM_027677
- UniProtKB: Q80UC7 (UniProtKB/Swiss-Prot),   Q5U431 (UniProtKB/Swiss-Prot),   A0A0B4J1E4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000027581   ⟸   ENSMUST00000027581
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U431-F1-model_v2 AlphaFold Q5U431 1-456 view protein structure

Promoters
RGD ID:6874764
Promoter ID:EPDNEW_M833
Type:initiation region
Name:Gpr39_1
Description:Mus musculus G protein-coupled receptor 39 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381125,676,988 - 125,677,048EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918361 AgrOrtholog
Ensembl Genes ENSMUSG00000026343 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027581 ENTREZGENE
  ENSMUST00000027581.7 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71111 UniProtKB/TrEMBL
MGD MGI:1918361 ENTREZGENE
NCBI Gene 71111 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR 39 UniProtKB/Swiss-Prot
  G-PROTEIN COUPLED RECEPTOR 39 UniProtKB/Swiss-Prot
  G-PROTEIN COUPLED RECEPTOR 39 UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR 39 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpr39 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0B4J1E4 ENTREZGENE, UniProtKB/TrEMBL
  A6QR71_MOUSE UniProtKB/TrEMBL
  GPR39_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q80UC7 ENTREZGENE
  Q9D442_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q80UC7 UniProtKB/Swiss-Prot