4833420G17Rik (RIKEN cDNA 4833420G17 gene) - Rat Genome Database

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Gene: 4833420G17Rik (RIKEN cDNA 4833420G17 gene) Mus musculus
Analyze
Symbol: 4833420G17Rik
Name: RIKEN cDNA 4833420G17 gene
RGD ID: 1314723
MGI Page MGI
Description: Is expressed in embryo and medial ganglionic eminence. Orthologous to human C5orf34 (chromosome 5 open reading frame 34).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210017J06Rik; 5730533D17Rik; AW107518; C85193; hypothetical protein LOC67392; uncharacterized protein C5orf34 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913119,599,295 - 119,622,656 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13119,599,304 - 119,622,656 (+)EnsemblGRCm39 Ensembl
GRCm3813119,462,015 - 119,486,120 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13119,462,768 - 119,486,120 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713120,251,566 - 120,274,924 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613120,581,645 - 120,604,990 (+)NCBIMGSCv36mm8
Celera13123,916,321 - 123,941,603 (+)NCBICelera
Cytogenetic Map13D2.3NCBI
cM Map1367.24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:17967808   PMID:18799693   PMID:18973680   PMID:30146317   PMID:31146259   PMID:38355793  


Genomics

Comparative Map Data
4833420G17Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913119,599,295 - 119,622,656 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13119,599,304 - 119,622,656 (+)EnsemblGRCm39 Ensembl
GRCm3813119,462,015 - 119,486,120 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13119,462,768 - 119,486,120 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713120,251,566 - 120,274,924 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613120,581,645 - 120,604,990 (+)NCBIMGSCv36mm8
Celera13123,916,321 - 123,941,603 (+)NCBICelera
Cytogenetic Map13D2.3NCBI
cM Map1367.24NCBI
C5orf34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38543,486,709 - 43,515,148 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl543,486,709 - 43,515,148 (-)EnsemblGRCh38hg38GRCh38
GRCh37543,486,811 - 43,515,250 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36543,522,567 - 43,550,944 (-)NCBINCBI36Build 36hg18NCBI36
Celera543,377,936 - 43,406,275 (-)NCBICelera
Cytogenetic Map5p12NCBI
HuRef543,437,926 - 43,466,376 (-)NCBIHuRef
CHM1_1543,488,068 - 43,516,540 (-)NCBICHM1_1
T2T-CHM13v2.0543,739,532 - 43,767,935 (-)NCBIT2T-CHM13v2.0
C2h5orf34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8253,287,353 - 53,309,804 (+)NCBIGRCr8
mRatBN7.2251,553,223 - 51,577,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl251,555,432 - 51,577,085 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx258,674,322 - 58,696,030 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0256,733,033 - 56,754,742 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0251,667,187 - 51,688,882 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0252,333,396 - 52,355,044 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl252,333,396 - 52,355,042 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0270,696,592 - 70,718,964 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4251,642,381 - 51,664,029 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1251,570,613 - 51,592,260 (+)NCBI
Celera247,210,389 - 47,232,051 (+)NCBICelera
Cytogenetic Map2q15NCBI
CUNH5orf34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544618,841,517 - 18,862,814 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544618,837,488 - 18,862,396 (+)NCBIChiLan1.0ChiLan1.0
C4H5orf34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2466,808,521 - 66,842,673 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1564,962,147 - 64,991,977 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0566,856,042 - 66,886,158 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1571,907,790 - 71,935,955 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl571,907,790 - 71,935,955 (+)Ensemblpanpan1.1panPan2
C4H5orf34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1466,496,210 - 66,538,317 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl466,461,257 - 66,528,051 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha466,256,967 - 66,290,673 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0466,988,663 - 67,022,387 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl466,988,611 - 67,020,514 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1466,746,764 - 66,780,465 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0466,877,423 - 66,911,117 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0467,412,978 - 67,446,684 (+)NCBIUU_Cfam_GSD_1.0
CUNH5orf34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213209,800,959 - 209,827,694 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648018,737,628 - 18,764,004 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648018,737,455 - 18,764,177 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C16H5orf34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1628,058,264 - 28,094,452 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11628,060,297 - 28,094,206 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21629,633,610 - 29,654,205 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH5orf34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1442,234,849 - 42,295,683 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl442,273,956 - 42,295,320 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607132,740,349 - 32,768,356 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH5orf34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475911,700,413 - 11,720,868 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475911,696,985 - 11,721,000 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 4833420G17Rik
804 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:63
Interacting mature miRNAs:66
Transcripts:ENSMUST00000026519
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse

Markers in Region
RH127150  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813119,485,916 - 119,486,116UniSTSGRCm38
MGSCv3713120,274,723 - 120,274,923UniSTSGRCm37
Celera13123,941,402 - 123,941,602UniSTS
Cytogenetic Map13D2.3UniSTS
Whitehead/MRC_RH131026.57UniSTS
AW107518  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813119,485,873 - 119,485,997UniSTSGRCm38
MGSCv3713120,274,680 - 120,274,804UniSTSGRCm37
Celera13123,941,359 - 123,941,483UniSTS
Cytogenetic Map13D2.3UniSTS
Whitehead/MRC_RH131025.86UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK389219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000026519   ⟹   ENSMUSP00000026519
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13119,599,304 - 119,622,653 (+)Ensembl
GRCm38.p6 Ensembl13119,462,768 - 119,486,117 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224081   ⟹   ENSMUSP00000153273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13119,599,310 - 119,606,361 (+)Ensembl
GRCm38.p6 Ensembl13119,462,774 - 119,469,825 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224312   ⟹   ENSMUSP00000153150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13119,599,320 - 119,622,653 (+)Ensembl
GRCm38.p6 Ensembl13119,462,784 - 119,486,117 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225186   ⟹   ENSMUSP00000153079
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13119,599,308 - 119,622,656 (+)Ensembl
GRCm38.p6 Ensembl13119,462,772 - 119,486,120 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13119,599,312 - 119,600,874 (+)Ensembl
GRCm38.p6 Ensembl13119,462,776 - 119,464,338 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225726   ⟹   ENSMUSP00000153338
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13119,599,312 - 119,622,653 (+)Ensembl
GRCm38.p6 Ensembl13119,462,776 - 119,486,117 (+)Ensembl
RefSeq Acc Id: NM_001113550   ⟹   NP_001107022
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913119,599,295 - 119,622,653 (+)NCBI
GRCm3813119,462,759 - 119,486,117 (+)NCBI
MGSCv3713120,251,566 - 120,274,924 (+)RGD
Celera13123,916,321 - 123,941,603 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001360805   ⟹   NP_001347734
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913119,599,295 - 119,622,656 (+)NCBI
GRCm3813119,462,759 - 119,486,120 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026127   ⟹   NP_080403
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913119,599,295 - 119,622,653 (+)NCBI
GRCm3813119,462,759 - 119,486,117 (+)NCBI
MGSCv3713120,251,566 - 120,274,924 (+)RGD
Celera13123,916,321 - 123,941,603 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153825
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913119,599,295 - 119,622,656 (+)NCBI
GRCm3813119,462,759 - 119,486,120 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517743   ⟹   XP_006517806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913119,601,101 - 119,622,656 (+)NCBI
GRCm3813119,462,015 - 119,486,120 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517744   ⟹   XP_006517807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913119,599,303 - 119,622,656 (+)NCBI
GRCm3813119,462,015 - 119,486,120 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517747   ⟹   XP_006517810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913119,599,300 - 119,622,656 (+)NCBI
GRCm3813119,462,015 - 119,486,120 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517748   ⟹   XP_006517811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913119,599,333 - 119,622,656 (+)NCBI
GRCm3813119,462,015 - 119,486,120 (+)NCBI
Sequence:
RefSeq Acc Id: NP_080403   ⟸   NM_026127
- UniProtKB: Q9CUS5 (UniProtKB/Swiss-Prot),   Q8K3D5 (UniProtKB/Swiss-Prot),   Q78HE1 (UniProtKB/Swiss-Prot),   Q3UF19 (UniProtKB/Swiss-Prot),   Q3TUB6 (UniProtKB/Swiss-Prot),   Q9D822 (UniProtKB/Swiss-Prot),   Q3UJC8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001107022   ⟸   NM_001113550
- UniProtKB: Q9CUS5 (UniProtKB/Swiss-Prot),   Q8K3D5 (UniProtKB/Swiss-Prot),   Q78HE1 (UniProtKB/Swiss-Prot),   Q3UF19 (UniProtKB/Swiss-Prot),   Q3TUB6 (UniProtKB/Swiss-Prot),   Q9D822 (UniProtKB/Swiss-Prot),   Q3UJC8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006517810   ⟸   XM_006517747
- Peptide Label: isoform X1
- UniProtKB: Q9CUS5 (UniProtKB/Swiss-Prot),   Q8K3D5 (UniProtKB/Swiss-Prot),   Q78HE1 (UniProtKB/Swiss-Prot),   Q3UF19 (UniProtKB/Swiss-Prot),   Q3TUB6 (UniProtKB/Swiss-Prot),   Q9D822 (UniProtKB/Swiss-Prot),   Q3UJC8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006517806   ⟸   XM_006517743
- Peptide Label: isoform X1
- UniProtKB: Q78HE1 (UniProtKB/Swiss-Prot),   Q3UF19 (UniProtKB/Swiss-Prot),   Q3TUB6 (UniProtKB/Swiss-Prot),   Q9CUS5 (UniProtKB/Swiss-Prot),   Q8K3D5 (UniProtKB/Swiss-Prot),   Q9D822 (UniProtKB/Swiss-Prot),   Q3UJC8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006517811   ⟸   XM_006517748
- Peptide Label: isoform X1
- UniProtKB: Q9CUS5 (UniProtKB/Swiss-Prot),   Q8K3D5 (UniProtKB/Swiss-Prot),   Q78HE1 (UniProtKB/Swiss-Prot),   Q3UF19 (UniProtKB/Swiss-Prot),   Q3TUB6 (UniProtKB/Swiss-Prot),   Q9D822 (UniProtKB/Swiss-Prot),   Q3UJC8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006517807   ⟸   XM_006517744
- Peptide Label: isoform X1
- UniProtKB: Q9CUS5 (UniProtKB/Swiss-Prot),   Q8K3D5 (UniProtKB/Swiss-Prot),   Q78HE1 (UniProtKB/Swiss-Prot),   Q3UF19 (UniProtKB/Swiss-Prot),   Q3TUB6 (UniProtKB/Swiss-Prot),   Q9D822 (UniProtKB/Swiss-Prot),   Q3UJC8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001347734   ⟸   NM_001360805
- UniProtKB: Q9CUS5 (UniProtKB/Swiss-Prot),   Q8K3D5 (UniProtKB/Swiss-Prot),   Q78HE1 (UniProtKB/Swiss-Prot),   Q3UJC8 (UniProtKB/Swiss-Prot),   Q3UF19 (UniProtKB/Swiss-Prot),   Q3TUB6 (UniProtKB/Swiss-Prot),   Q9D822 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000026519   ⟸   ENSMUST00000026519
RefSeq Acc Id: ENSMUSP00000153079   ⟸   ENSMUST00000225186
RefSeq Acc Id: ENSMUSP00000153338   ⟸   ENSMUST00000225726
RefSeq Acc Id: ENSMUSP00000153273   ⟸   ENSMUST00000224081
RefSeq Acc Id: ENSMUSP00000153150   ⟸   ENSMUST00000224312
Protein Domains
DUF4524

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UJC8-F1-model_v2 AlphaFold Q3UJC8 1-639 view protein structure

Promoters
RGD ID:8681388
Promoter ID:EPDNEW_M18725
Type:initiation region
Name:4833420G17Rik_1
Description:Mus musculus RIKEN cDNA 4833420G17 gene , transcript variant4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813119,462,769 - 119,462,829EPDNEW
RGD ID:6823565
Promoter ID:MM_KWN:15371
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2
Transcripts:NM_001113550,   NM_026127,   UC007RZE.1,   UC007RZF.1,   UC007RZG.1,   UC007RZH.1,   UC007RZI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3613120,250,504 - 120,251,004 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914642 AgrOrtholog
Ensembl Genes ENSMUSG00000062822 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026519 ENTREZGENE
  ENSMUST00000026519.10 UniProtKB/Swiss-Prot
  ENSMUST00000224081.2 UniProtKB/TrEMBL
  ENSMUST00000224312 ENTREZGENE
  ENSMUST00000224312.2 UniProtKB/Swiss-Prot
  ENSMUST00000225186 ENTREZGENE
  ENSMUST00000225186.2 UniProtKB/Swiss-Prot
  ENSMUST00000225726 ENTREZGENE
  ENSMUST00000225726.2 UniProtKB/Swiss-Prot
InterPro DUF4520 UniProtKB/Swiss-Prot
  DUF4524 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67392 UniProtKB/Swiss-Prot
MGD MGI:1914642 ENTREZGENE
NCBI Gene 67392 ENTREZGENE
PANTHER ZGC:153352 UniProtKB/Swiss-Prot
  ZGC:153352 UniProtKB/Swiss-Prot
  ZGC:153352 UniProtKB/TrEMBL
  ZGC:153352 UniProtKB/TrEMBL
Pfam DUF4520 UniProtKB/Swiss-Prot
  DUF4524 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 4833420G17Rik PhenoGen
UniProt A0A286YD57_MOUSE UniProtKB/TrEMBL
  CE034_MOUSE UniProtKB/Swiss-Prot
  Q3TUB6 ENTREZGENE
  Q3UF19 ENTREZGENE
  Q3UJC8 ENTREZGENE
  Q78HE1 ENTREZGENE
  Q8K3D5 ENTREZGENE
  Q9CUS5 ENTREZGENE
  Q9D822 ENTREZGENE
UniProt Secondary Q3TUB6 UniProtKB/Swiss-Prot
  Q3UF19 UniProtKB/Swiss-Prot
  Q78HE1 UniProtKB/Swiss-Prot
  Q8K3D5 UniProtKB/Swiss-Prot
  Q9CUS5 UniProtKB/Swiss-Prot
  Q9D822 UniProtKB/Swiss-Prot