Krr1 (KRR1, small subunit (SSU) processome component, homolog (yeast)) - Rat Genome Database

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Gene: Krr1 (KRR1, small subunit (SSU) processome component, homolog (yeast)) Mus musculus
Analyze
Symbol: Krr1
Name: KRR1, small subunit (SSU) processome component, homolog (yeast)
RGD ID: 1314658
MGI Page MGI
Description: Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to act upstream of or within rRNA processing. Predicted to be located in chromosome; intercellular bridge; and nucleoplasm. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including brain; esophagus; head mesenchyme; sensory organ; and spinal cord. Orthologous to human KRR1 (KRR1 small subunit processome component homolog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610511F02Rik; AI255219; AI428520; D10Ertd773; D10Ertd773e; HIV-1 Rev binding protein 2; HIV-1 Rev-binding protein 2 homolog; Hrb; Hrb2; KRR-R motif-containing protein 1; KRR1 small subunit processome component homolog; KRR1, small subunit processome component
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm11896  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910111,808,600 - 111,824,335 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10111,808,569 - 111,824,337 (+)EnsemblGRCm39 Ensembl
GRCm3810111,972,695 - 111,988,430 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10111,972,664 - 111,988,432 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710111,409,751 - 111,425,486 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610111,376,894 - 111,391,193 (+)NCBIMGSCv36mm8
Celera10113,918,628 - 113,934,364 (+)NCBICelera
Cytogenetic Map10D1- D2NCBI
cM Map1059.97NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16033648   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:18799693   PMID:20059953   PMID:21267068   PMID:21873635   PMID:24457600   PMID:28378742   PMID:34133714  


Genomics

Comparative Map Data
Krr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910111,808,600 - 111,824,335 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10111,808,569 - 111,824,337 (+)EnsemblGRCm39 Ensembl
GRCm3810111,972,695 - 111,988,430 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10111,972,664 - 111,988,432 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710111,409,751 - 111,425,486 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610111,376,894 - 111,391,193 (+)NCBIMGSCv36mm8
Celera10113,918,628 - 113,934,364 (+)NCBICelera
Cytogenetic Map10D1- D2NCBI
cM Map1059.97NCBI
KRR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381275,490,863 - 75,511,609 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1275,490,863 - 75,511,636 (-)EnsemblGRCh38hg38GRCh38
GRCh371275,884,643 - 75,905,389 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361274,177,686 - 74,191,685 (-)NCBINCBI36Build 36hg18NCBI36
Build 341274,177,685 - 74,191,659NCBI
Celera1275,558,782 - 75,572,781 (-)NCBICelera
Cytogenetic Map12q21.2NCBI
HuRef1272,941,052 - 72,955,049 (-)NCBIHuRef
CHM1_11275,856,837 - 75,870,833 (-)NCBICHM1_1
T2T-CHM13v2.01275,465,553 - 75,486,296 (-)NCBIT2T-CHM13v2.0
Krr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8749,361,794 - 49,374,222 (+)NCBIGRCr8
mRatBN7.2747,475,557 - 47,486,996 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl747,475,557 - 47,486,985 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx749,377,636 - 49,389,072 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0751,580,718 - 51,592,154 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0751,358,539 - 51,369,975 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0754,756,043 - 54,767,477 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl754,756,043 - 54,767,471 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0754,780,329 - 54,791,763 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4751,069,927 - 51,081,361 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1751,090,511 - 51,101,428 (+)NCBI
Celera744,272,748 - 44,284,182 (+)NCBICelera
Cytogenetic Map7q22NCBI
Krr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540514,851,602 - 14,864,985 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540514,851,602 - 14,864,838 (-)NCBIChiLan1.0ChiLan1.0
KRR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21083,537,828 - 83,553,806 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11283,534,220 - 83,550,115 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01273,021,700 - 73,037,582 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11275,874,714 - 75,889,408 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1275,874,714 - 75,889,408 (-)Ensemblpanpan1.1panPan2
LOC475405
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11518,694,162 - 18,705,566 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1518,538,751 - 18,705,519 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1519,178,245 - 19,189,654 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01519,031,231 - 19,042,634 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1519,031,557 - 19,042,569 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11518,634,651 - 18,646,028 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01518,690,669 - 18,702,072 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01518,819,551 - 18,830,949 (-)NCBIUU_Cfam_GSD_1.0
Krr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494541,767,568 - 41,779,570 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365683,949,877 - 3,960,882 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365683,949,593 - 3,960,721 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl538,809,854 - 38,821,731 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1538,809,748 - 38,821,782 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2542,373,115 - 42,385,143 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11171,105,372 - 71,118,039 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1171,105,645 - 71,118,040 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037174,446,186 - 174,458,757 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475022,542,225 - 22,555,950 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Krr1
549 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1254
Count of miRNA genes:665
Interacting mature miRNAs:817
Transcripts:ENSMUST00000075924, ENSMUST00000162678, ENSMUST00000163048, ENSMUST00000174653
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099309418116220862Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099309418116220862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
26884388Skwq7_mskull length QTL 7, 10 week (mouse)10101735861113735905Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105088254118497353Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108635861125435869Mouse
27095902Scvln11_msacral vertebrae length 2, 10 week (mouse)10110035861125435869Mouse
11353822Insq12_minsulin QTL 12 (mouse)10110453347125515907Mouse
11353823Homaq2_mhomeostatic model assessment QTL 2 (mouse)10110453347125515907Mouse
10412078Hylaq3_mHyperlocomotor activity related QTL 3 (mouse)Not determined10111568226117986649Mouse

Markers in Region
RH126882  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810111,984,690 - 111,984,939UniSTSGRCm38
MGSCv3710111,421,746 - 111,421,995UniSTSGRCm37
Celera10113,930,623 - 113,930,872UniSTS
Cytogenetic Map10D2UniSTS
cM Map1060.0UniSTS
Whitehead/MRC_RH101194.71UniSTS
RH136035  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810111,984,785 - 111,984,972UniSTSGRCm38
MGSCv3710111,421,841 - 111,422,028UniSTSGRCm37
Celera10113,930,718 - 113,930,905UniSTS
Cytogenetic Map10D2UniSTS
cM Map1060.0UniSTS
RH136439  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810111,985,833 - 111,986,040UniSTSGRCm38
MGSCv3710111,422,889 - 111,423,096UniSTSGRCm37
Celera10113,931,766 - 113,931,973UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map10D1UniSTS
cM Map1060.0UniSTS
Krr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810111,985,183 - 111,985,722UniSTSGRCm38
MGSCv3710111,422,239 - 111,422,778UniSTSGRCm37
Celera10113,931,116 - 113,931,655UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map10D2UniSTS
cM Map1060.0UniSTS
D10Ertd773e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810111,985,767 - 111,985,969UniSTSGRCm38
MGSCv3710111,422,823 - 111,423,025UniSTSGRCm37
Celera10113,931,700 - 113,931,902UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map10D1UniSTS
cM Map1060.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000075924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10111,808,680 - 111,822,799 (+)Ensembl
GRCm38.p6 Ensembl10111,972,775 - 111,986,894 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162678
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10111,808,662 - 111,812,420 (+)Ensembl
GRCm38.p6 Ensembl10111,972,757 - 111,976,515 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163048   ⟹   ENSMUSP00000125746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10111,808,569 - 111,824,337 (+)Ensembl
GRCm38.p6 Ensembl10111,972,664 - 111,988,432 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174653   ⟹   ENSMUSP00000134408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10111,808,698 - 111,820,586 (+)Ensembl
GRCm38.p6 Ensembl10111,972,793 - 111,984,681 (+)Ensembl
RefSeq Acc Id: NM_178610   ⟹   NP_848725
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910111,808,600 - 111,824,335 (+)NCBI
GRCm3810111,972,695 - 111,988,430 (+)ENTREZGENE
MGSCv3710111,409,751 - 111,425,486 (+)RGD
Celera10113,918,628 - 113,934,364 (+)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_848725   ⟸   NM_178610
- UniProtKB: Q5EBJ5 (UniProtKB/Swiss-Prot),   Q52KQ6 (UniProtKB/Swiss-Prot),   Q3UIG9 (UniProtKB/Swiss-Prot),   Q8C029 (UniProtKB/Swiss-Prot),   Q8BGA5 (UniProtKB/Swiss-Prot),   G3UZA0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000125746   ⟸   ENSMUST00000163048
RefSeq Acc Id: ENSMUSP00000134408   ⟸   ENSMUST00000174653
Protein Domains
K Homology   KH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BGA5-F1-model_v2 AlphaFold Q8BGA5 1-380 view protein structure

Promoters
RGD ID:6819487
Promoter ID:MM_KWN:5611
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000099281,   OTTMUST00000068758,   OTTMUST00000068759,   OTTMUST00000068760,   UC007HAG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610111,409,651 - 111,410,151 (+)MPROMDB
RGD ID:8673246
Promoter ID:EPDNEW_M14653
Type:initiation region
Name:Krr1_1
Description:Mus musculus KRR1, small subunit processome component, homolog, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810111,972,784 - 111,972,844EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1289274 AgrOrtholog
Ensembl Genes ENSMUSG00000063334 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000163048 ENTREZGENE
  ENSMUST00000163048.8 UniProtKB/Swiss-Prot
  ENSMUST00000174653.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro KH_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRR1-like_KH1_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRR1-like_KH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRR1-like_KH2_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rRNA_assembly_KRR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:52705 UniProtKB/Swiss-Prot
MGD MGI:1289274 ENTREZGENE
NCBI Gene 52705 ENTREZGENE
PANTHER KRR1 SMALL SUBUNIT PROCESSOME COMPONENT HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12581 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KH_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRR1-like_KH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Krr1 PhenoGen
PIRSF KRR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3UZA0 ENTREZGENE, UniProtKB/TrEMBL
  KRR1_MOUSE UniProtKB/Swiss-Prot
  Q3UIG9 ENTREZGENE
  Q52KQ6 ENTREZGENE
  Q5EBJ5 ENTREZGENE
  Q8BGA5 ENTREZGENE
  Q8BVE7_MOUSE UniProtKB/TrEMBL
  Q8C029 ENTREZGENE
UniProt Secondary Q3UIG9 UniProtKB/Swiss-Prot
  Q52KQ6 UniProtKB/Swiss-Prot
  Q5EBJ5 UniProtKB/Swiss-Prot
  Q8C029 UniProtKB/Swiss-Prot