Cotl1 (coactosin like F-actin binding protein 1) - Rat Genome Database

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Gene: Cotl1 (coactosin like F-actin binding protein 1) Mus musculus
Analyze
Symbol: Cotl1
Name: coactosin like F-actin binding protein 1 (Ensembl:coactosin-like 1 (Dictyostelium))
RGD ID: 1313561
MGI Page MGI
Description: Enables actin binding activity and enzyme binding activity. Involved in defense response to fungus. Predicted to be located in cytosol. Predicted to be active in cortical actin cytoskeleton and site of polarized growth. Predicted to colocalize with actin filament. Is expressed in several structures, including brain; gut; renal cortex; sensory organ; and trachea. Orthologous to human COTL1 (coactosin like F-actin binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810074P22Rik; 2010004C08Rik; Clp; coactosin-like 1; coactosin-like 1 (Dictyostelium); coactosin-like protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,535,953 - 120,567,318 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,535,961 - 120,567,283 (-)EnsemblGRCm39 Ensembl
GRCm388119,809,214 - 119,840,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,809,222 - 119,840,544 (-)EnsemblGRCm38mm10GRCm38
MGSCv378122,333,114 - 122,364,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368122,695,202 - 122,726,517 (-)NCBIMGSCv36mm8
Celera8124,025,809 - 124,057,174 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map868.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP,ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
cobalt dichloride  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diclofenac  (EXP)
dimethylarsinic acid  (EXP)
diquat  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (EXP)
folic acid  (EXP)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glycidyl methacrylate  (ISO)
glycine betaine  (ISO)
glyphosate  (ISO)
hydrazine  (EXP)
indometacin  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
methidathion  (EXP)
methyl methanesulfonate  (ISO)
methylarsonic acid  (EXP)
methylmercury chloride  (ISO)
monosodium L-glutamate  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nevirapine  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
oxycodone  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
sodium fluoride  (EXP)
streptozocin  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11785969   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18554416  
PMID:18799693   PMID:21267068   PMID:21308776   PMID:21873635   PMID:22008794   PMID:24457600   PMID:24952961   PMID:27626380   PMID:28385010   PMID:30457570   PMID:31582545   PMID:32325033  
PMID:34321999   PMID:36114006   PMID:36293380   PMID:36417873   PMID:38355793  


Genomics

Comparative Map Data
Cotl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,535,953 - 120,567,318 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,535,961 - 120,567,283 (-)EnsemblGRCm39 Ensembl
GRCm388119,809,214 - 119,840,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,809,222 - 119,840,544 (-)EnsemblGRCm38mm10GRCm38
MGSCv378122,333,114 - 122,364,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368122,695,202 - 122,726,517 (-)NCBIMGSCv36mm8
Celera8124,025,809 - 124,057,174 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map868.42NCBI
COTL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381684,565,596 - 84,618,078 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1684,565,596 - 84,618,078 (-)EnsemblGRCh38hg38GRCh38
GRCh371684,599,202 - 84,651,684 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361683,156,703 - 83,209,170 (-)NCBINCBI36Build 36hg18NCBI36
Build 341683,156,706 - 83,209,170NCBI
Celera1668,901,034 - 68,953,456 (-)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1670,352,055 - 70,404,781 (-)NCBIHuRef
CHM1_11686,010,791 - 86,063,243 (-)NCBICHM1_1
T2T-CHM13v2.01690,631,897 - 90,684,371 (-)NCBIT2T-CHM13v2.0
Cotl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81964,780,309 - 64,814,629 (-)NCBIGRCr8
mRatBN7.21947,871,689 - 47,906,010 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1947,871,694 - 47,911,689 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1954,666,008 - 54,700,332 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01955,346,754 - 55,381,075 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01957,559,721 - 57,594,016 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01952,465,074 - 52,499,433 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1952,465,087 - 52,499,433 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01963,209,153 - 63,243,569 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,096,620 - 50,130,253 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11950,101,505 - 50,135,146 (-)NCBI
Celera1947,128,853 - 47,162,796 (-)NCBICelera
Cytogenetic Map19q12NCBI
Cotl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955541153,542 - 183,965 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955541153,542 - 183,965 (-)NCBIChiLan1.0ChiLan1.0
COTL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21894,312,954 - 94,366,402 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116100,230,272 - 100,283,576 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01665,231,112 - 65,284,079 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11684,572,810 - 84,625,177 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1684,572,816 - 84,625,177 (-)Ensemblpanpan1.1panPan2
COTL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1567,872,065 - 67,909,536 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl567,872,314 - 67,908,637 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha567,886,320 - 67,924,028 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0568,105,128 - 68,142,858 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl568,104,864 - 68,142,853 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1568,118,095 - 68,155,666 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0567,954,340 - 67,992,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0568,369,594 - 68,407,331 (+)NCBIUU_Cfam_GSD_1.0
Cotl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,670,703 - 27,705,283 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366413,423,144 - 3,455,432 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366413,422,734 - 3,458,830 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COTL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl64,099,414 - 4,147,469 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.164,099,341 - 4,146,281 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
COTL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1569,966,655 - 70,019,338 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl569,967,900 - 70,019,307 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660475,730,731 - 5,784,025 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cotl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247461,485,321 - 1,510,276 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247461,485,301 - 1,510,193 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cotl1
918 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:749
Count of miRNA genes:280
Interacting mature miRNAs:303
Transcripts:ENSMUST00000034285, ENSMUST00000168698
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse

Markers in Region
UniSTS:236020  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388119,809,257 - 119,809,477UniSTSGRCm38
MGSCv378122,333,157 - 122,333,377UniSTSGRCm37
Celera8124,025,852 - 124,026,072UniSTS
Cytogenetic Map8E1UniSTS
Cotl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8E1UniSTS
cM Map8 UniSTS
PZD00074_allele_9942870  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388119,831,054 - 119,832,245UniSTSGRCm38
GRCm38655,651,131 - 55,652,223UniSTSGRCm38
MGSCv378122,354,954 - 122,356,145UniSTSGRCm37
MGSCv37655,601,125 - 55,602,217UniSTSGRCm37
Celera8124,047,648 - 124,048,839UniSTS
Celera656,187,642 - 56,188,734UniSTS
Cytogenetic Map8E1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_028071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY200873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000034285   ⟹   ENSMUSP00000034285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8120,535,961 - 120,567,283 (-)Ensembl
GRCm38.p6 Ensembl8119,809,222 - 119,840,544 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168698   ⟹   ENSMUSP00000126329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8120,535,964 - 120,567,261 (-)Ensembl
GRCm38.p6 Ensembl8119,809,225 - 119,840,522 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211873   ⟹   ENSMUSP00000148448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8120,536,297 - 120,567,236 (-)Ensembl
GRCm38.p6 Ensembl8119,809,558 - 119,840,497 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8120,536,922 - 120,549,456 (-)Ensembl
GRCm38.p6 Ensembl8119,810,183 - 119,822,717 (-)Ensembl
RefSeq Acc Id: NM_028071   ⟹   NP_082347
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398120,535,953 - 120,567,318 (-)NCBI
GRCm388119,809,214 - 119,840,579 (-)ENTREZGENE
MGSCv378122,333,114 - 122,364,479 (-)RGD
Celera8124,025,809 - 124,057,174 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_082347   ⟸   NM_028071
- UniProtKB: Q9CQI6 (UniProtKB/Swiss-Prot),   Q544F6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000148448   ⟸   ENSMUST00000211873
RefSeq Acc Id: ENSMUSP00000034285   ⟸   ENSMUST00000034285
RefSeq Acc Id: ENSMUSP00000126329   ⟸   ENSMUST00000168698
Protein Domains
ADF-H

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQI6-F1-model_v2 AlphaFold Q9CQI6 1-142 view protein structure

Promoters
RGD ID:8668441
Promoter ID:EPDNEW_M12251
Type:initiation region
Name:Cotl1_1
Description:Mus musculus coactosin-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388119,840,540 - 119,840,600EPDNEW
RGD ID:6842965
Promoter ID:MM_KWN:55914
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_028071,   UC009NQJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368122,364,281 - 122,364,781 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919292 AgrOrtholog
Ensembl Genes ENSMUSG00000031827 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034285 ENTREZGENE
  ENSMUST00000034285.14 UniProtKB/Swiss-Prot
  ENSMUST00000168698.2 UniProtKB/Swiss-Prot
  ENSMUST00000211873.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ADF-H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADF-H/Gelsolin-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72042 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1919292 ENTREZGENE
NCBI Gene 72042 ENTREZGENE
PANTHER CORTACTIN AND DREBRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10829:SF29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cofilin_ADF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cotl1 PhenoGen
PROSITE ADF_H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ADF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Actin depolymerizing proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RLP1_MOUSE UniProtKB/TrEMBL
  COTL1_MOUSE UniProtKB/Swiss-Prot
  Q544F6 ENTREZGENE, UniProtKB/TrEMBL
  Q9CQI6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Cotl1  coactosin like F-actin binding protein 1  Cotl1  coactosin-like 1 (Dictyostelium)  Symbol and/or name change 5135510 APPROVED