Pdzrn3 (PDZ domain containing RING finger 3) - Rat Genome Database

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Gene: Pdzrn3 (PDZ domain containing RING finger 3) Mus musculus
Analyze
Symbol: Pdzrn3
Name: PDZ domain containing RING finger 3
RGD ID: 1313170
MGI Page MGI
Description: Enables ubiquitin protein ligase activity. Involved in neuromuscular junction development and protein ubiquitination. Located in neuromuscular junction. Is expressed in several structures, including blood vessel endothelium; brain; genitourinary system; tail paraxial mesenchyme; and tibialis muscle. Orthologous to human PDZRN3 (PDZ domain containing ring finger 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110020C07Rik; AI429718; AL023082; E3 ubiquitin-protein ligase PDZRN3; LN; LNX3; PDZ domain containing RING finger 3A; PDZ domain-containing RING finger protein 3; RING-type E3 ubiquitin transferase PDZRN3; SEMACAP3; semaphorin cytoplasmic domain-associated protein 3; semaphorin cytoplasmic domain-associated protein 3A; Semc; Semcap3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396101,126,568 - 101,354,858 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6101,126,570 - 101,354,858 (-)EnsemblGRCm39 Ensembl
GRCm386101,149,607 - 101,377,897 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6101,149,609 - 101,377,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv376101,099,601 - 101,327,891 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366101,115,712 - 101,343,995 (-)NCBIMGSCv36mm8
Celera6103,016,258 - 103,244,142 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map646.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
amitrole  (ISO)
andrographolide  (EXP)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
dexamethasone  (EXP,ISO)
dibenzofurans  (EXP)
dorsomorphin  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (ISO)
glafenine  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (EXP)
L-methionine  (EXP)
lead diacetate  (EXP)
lead(0)  (EXP)
lipopolysaccharide  (EXP)
methapyrilene  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenformin  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
profenofos  (ISO)
SB 431542  (ISO)
Securinine  (ISO)
senecionine  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
sulfadimethoxine  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:7671812   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15188402   PMID:15368895   PMID:15489334   PMID:15511637   PMID:15618518   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:17118964   PMID:17576800   PMID:18287559   PMID:20668165   PMID:21267068   PMID:21862448   PMID:21873635   PMID:23576576   PMID:24931612   PMID:25198863  
PMID:26671461   PMID:28143902   PMID:29779941   PMID:30066954   PMID:30529950   PMID:30550785   PMID:30635555   PMID:31980707   PMID:32325033   PMID:33060132   PMID:33238113   PMID:34135125  
PMID:34321999   PMID:34644209   PMID:34996942   PMID:38020907   PMID:38355793   PMID:38471344  


Genomics

Comparative Map Data
Pdzrn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396101,126,568 - 101,354,858 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6101,126,570 - 101,354,858 (-)EnsemblGRCm39 Ensembl
GRCm386101,149,607 - 101,377,897 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6101,149,609 - 101,377,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv376101,099,601 - 101,327,891 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366101,115,712 - 101,343,995 (-)NCBIMGSCv36mm8
Celera6103,016,258 - 103,244,142 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map646.95NCBI
PDZRN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38373,382,431 - 73,624,941 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl373,382,431 - 73,624,941 (-)EnsemblGRCh38hg38GRCh38
GRCh37373,431,582 - 73,674,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36373,514,342 - 73,756,762 (-)NCBINCBI36Build 36hg18NCBI36
Celera373,365,735 - 73,608,750 (-)NCBICelera
Cytogenetic Map3p13NCBI
HuRef373,434,331 - 73,676,506 (-)NCBIHuRef
CHM1_1373,385,013 - 73,627,407 (-)NCBICHM1_1
T2T-CHM13v2.0373,423,926 - 73,666,429 (-)NCBIT2T-CHM13v2.0
Pdzrn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84135,327,082 - 135,553,294 (-)NCBIGRCr8
mRatBN7.24133,770,736 - 133,996,959 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4133,770,736 - 133,996,959 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4139,182,993 - 139,416,031 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04134,963,779 - 135,196,808 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04133,584,382 - 133,817,407 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04133,717,139 - 133,951,282 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4133,717,139 - 133,951,264 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04198,194,465 - 198,429,457 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44136,044,210 - 136,254,969 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14136,260,810 - 136,311,636 (-)NCBI
Celera4122,607,053 - 122,831,741 (-)NCBICelera
Cytogenetic Map4q34NCBI
Pdzrn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542114,648,524 - 14,877,822 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542114,648,436 - 14,878,759 (+)NCBIChiLan1.0ChiLan1.0
PDZRN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2273,337,666 - 73,581,399 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1373,342,455 - 73,586,188 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0373,322,613 - 73,565,929 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1375,245,623 - 75,488,415 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl375,246,558 - 75,488,499 (-)Ensemblpanpan1.1panPan2
PDZRN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12018,621,960 - 18,859,620 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2018,622,069 - 18,859,550 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2018,594,042 - 18,830,979 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02018,656,854 - 18,893,815 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2018,656,915 - 18,893,825 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12018,344,911 - 18,581,831 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02018,685,052 - 18,922,922 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02018,750,258 - 18,987,822 (+)NCBIUU_Cfam_GSD_1.0
Pdzrn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049424,218,675 - 4,420,201 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366034,218,212 - 4,420,087 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366034,218,675 - 4,423,450 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDZRN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1354,659,589 - 54,904,809 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11354,659,657 - 54,904,742 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21360,422,724 - 60,650,319 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDZRN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12234,325,208 - 34,567,748 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2234,326,144 - 34,567,633 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041132,201,578 - 132,443,428 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdzrn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247737,900,934 - 8,144,003 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247737,901,560 - 8,144,455 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pdzrn3
8119 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:456
Count of miRNA genes:327
Interacting mature miRNAs:388
Transcripts:ENSMUST00000075994, ENSMUST00000124884, ENSMUST00000144505, ENSMUST00000151175
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675424566104480516Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686783787113521563Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676440930110441074Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92584287111981699Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675584287109584431Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675693484109693678Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681476981102176961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse

Markers in Region
RH128427  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386101,149,673 - 101,149,858UniSTSGRCm38
MGSCv376101,099,667 - 101,099,852UniSTSGRCm37
Celera6103,016,324 - 103,016,509UniSTS
Cytogenetic Map6D3UniSTS
AI429718  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386101,149,826 - 101,149,943UniSTSGRCm38
MGSCv376101,099,820 - 101,099,937UniSTSGRCm37
Celera6103,016,477 - 103,016,594UniSTS
Cytogenetic Map6D3UniSTS
Whitehead/MRC_RH61012.9UniSTS
RH125416  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386101,150,023 - 101,150,142UniSTSGRCm38
MGSCv376101,100,017 - 101,100,136UniSTSGRCm37
Celera6103,016,674 - 103,016,793UniSTS
Cytogenetic Map6D3UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000075994   ⟹   ENSMUSP00000075376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6101,126,570 - 101,354,858 (-)Ensembl
GRCm38.p6 Ensembl6101,149,609 - 101,377,897 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6101,133,934 - 101,331,971 (-)Ensembl
GRCm38.p6 Ensembl6101,156,973 - 101,355,010 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6101,146,817 - 101,176,161 (-)Ensembl
GRCm38.p6 Ensembl6101,169,856 - 101,199,200 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6101,156,839 - 101,354,303 (-)Ensembl
GRCm38.p6 Ensembl6101,179,878 - 101,377,342 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239140   ⟹   ENSMUSP00000158931
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6101,128,302 - 101,176,147 (-)Ensembl
GRCm38.p6 Ensembl6101,151,341 - 101,199,186 (-)Ensembl
RefSeq Acc Id: NM_018884   ⟹   NP_061372
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396101,126,568 - 101,354,858 (-)NCBI
GRCm386101,149,607 - 101,377,897 (-)ENTREZGENE
MGSCv376101,099,601 - 101,327,891 (-)RGD
Celera6103,016,258 - 103,244,142 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506405   ⟹   XP_006506468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396101,126,575 - 101,176,183 (-)NCBI
GRCm386101,149,614 - 101,199,224 (-)NCBI
Sequence:
RefSeq Acc Id: NP_061372   ⟸   NM_018884
- UniProtKB: Q9QY54 (UniProtKB/Swiss-Prot),   Q91Z03 (UniProtKB/Swiss-Prot),   Q9QY55 (UniProtKB/Swiss-Prot),   Q69ZS0 (UniProtKB/Swiss-Prot),   Q3UPS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506468   ⟸   XM_006506405
- Peptide Label: isoform X1
- UniProtKB: Q3UPS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000158931   ⟸   ENSMUST00000239140
RefSeq Acc Id: ENSMUSP00000075376   ⟸   ENSMUST00000075994
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q69ZS0-F1-model_v2 AlphaFold Q69ZS0 1-1063 view protein structure

Promoters
RGD ID:6839733
Promoter ID:MM_KWN:47061
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000066669
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366101,148,836 - 101,149,336 (-)MPROMDB
RGD ID:6890554
Promoter ID:EPDNEW_M8728
Type:single initiation site
Name:Pdzrn3_1
Description:Mus musculus PDZ domain containing RING finger 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386101,199,198 - 101,199,258EPDNEW
RGD ID:6839739
Promoter ID:MM_KWN:47063
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:OTTMUST00000066671
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366101,304,501 - 101,305,001 (-)MPROMDB
RGD ID:6840013
Promoter ID:MM_KWN:47064
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000101117,   NM_018884,   NM_018884_PDZRN3,   UC009DCF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366101,327,246 - 101,328,052 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933157 AgrOrtholog
Ensembl Genes ENSMUSG00000035357 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000075994 ENTREZGENE
  ENSMUST00000075994.11 UniProtKB/Swiss-Prot
  ENSMUST00000239140.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot
  6.20.370.60 UniProtKB/TrEMBL
InterPro PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
  Znf_RING_CS UniProtKB/Swiss-Prot
  Znf_TRAF UniProtKB/Swiss-Prot
KEGG Report mmu:55983 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1933157 ENTREZGENE
NCBI Gene 55983 ENTREZGENE
PANTHER DISCS LARGE UniProtKB/TrEMBL
  DISKS LARGE 1 TUMOR SUPPRESSOR PROTEIN UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE PDZRN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/Swiss-Prot
PhenoGen Pdzrn3 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
  ZF_TRAF UniProtKB/Swiss-Prot
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRAF domain-like UniProtKB/Swiss-Prot
UniProt A0A5F8MPS6_MOUSE UniProtKB/TrEMBL
  PZRN3_MOUSE UniProtKB/Swiss-Prot
  Q3UPS8 ENTREZGENE, UniProtKB/TrEMBL
  Q3UXA7_MOUSE UniProtKB/TrEMBL
  Q69ZS0 ENTREZGENE
  Q91Z03 ENTREZGENE
  Q9QY54 ENTREZGENE
  Q9QY55 ENTREZGENE
UniProt Secondary Q91Z03 UniProtKB/Swiss-Prot
  Q9QY54 UniProtKB/Swiss-Prot
  Q9QY55 UniProtKB/Swiss-Prot