Dse (dermatan sulfate epimerase) - Rat Genome Database

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Gene: Dse (dermatan sulfate epimerase) Mus musculus
Analyze
Symbol: Dse
Name: dermatan sulfate epimerase
RGD ID: 1312898
MGI Page MGI
Description: Predicted to enable chondroitin-glucuronate 5-epimerase activity. Predicted to be involved in chondroitin sulfate metabolic process and dermatan sulfate biosynthetic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Is expressed in several structures, including brain; cardiovascular system; endocrine gland; genitourinary system; and oral epithelium. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome musculocontractural type 2. Orthologous to human DSE (dermatan sulfate epimerase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6030499O08; AI480506; B130024B19Rik; chondroitin-glucuronate 5-epimerase; dermatan-sulfate epimerase; DS epimerase; DS-e; DS-epi1; Sa; SART-2; Sart2; squamous cell carcinoma antigen recognized by T cells 2; squamous cell carcinoma antigen recognized by T-cells 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391034,027,385 - 34,084,267 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1034,027,389 - 34,083,711 (-)EnsemblGRCm39 Ensembl
GRCm381034,151,389 - 34,208,282 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1034,151,393 - 34,207,715 (-)EnsemblGRCm38mm10GRCm38
MGSCv371033,871,199 - 33,927,357 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361033,840,809 - 33,896,967 (-)NCBIMGSCv36mm8
Celera1035,061,127 - 35,117,279 (-)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1018.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:19687302   PMID:21873635   PMID:23441919   PMID:23843960   PMID:24194600   PMID:25186462   PMID:26488883   PMID:28378742  


Genomics

Comparative Map Data
Dse
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391034,027,385 - 34,084,267 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1034,027,389 - 34,083,711 (-)EnsemblGRCm39 Ensembl
GRCm381034,151,389 - 34,208,282 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1034,151,393 - 34,207,715 (-)EnsemblGRCm38mm10GRCm38
MGSCv371033,871,199 - 33,927,357 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361033,840,809 - 33,896,967 (-)NCBIMGSCv36mm8
Celera1035,061,127 - 35,117,279 (-)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1018.85NCBI
DSE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386116,254,171 - 116,444,861 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6116,254,173 - 116,444,861 (+)EnsemblGRCh38hg38GRCh38
GRCh376116,575,334 - 116,766,024 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366116,707,976 - 116,866,135 (+)NCBINCBI36Build 36hg18NCBI36
Build 346116,798,881 - 116,866,133NCBI
Celera6117,344,314 - 117,502,508 (+)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6114,181,450 - 114,339,311 (+)NCBIHuRef
CHM1_16116,865,191 - 117,023,085 (+)NCBICHM1_1
T2T-CHM13v2.06117,438,152 - 117,628,566 (+)NCBIT2T-CHM13v2.0
Dse
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82026,661,326 - 26,740,011 (-)NCBIGRCr8
mRatBN7.22026,118,194 - 26,196,889 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2026,118,196 - 26,196,992 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2027,120,508 - 27,199,222 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02026,506,862 - 26,585,582 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02027,254,988 - 27,333,669 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,703,738 - 27,784,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,703,732 - 27,782,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,528,495 - 29,603,741 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,568,889 - 37,647,574 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12037,588,364 - 37,668,729 (+)NCBI
Celera2027,571,821 - 27,650,168 (-)NCBICelera
Cytogenetic Map20q11NCBI
Dse
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955526348,519 - 392,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955526348,673 - 393,328 (-)NCBIChiLan1.0ChiLan1.0
DSE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25136,288,202 - 136,445,963 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16134,181,178 - 134,338,956 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06114,173,641 - 114,246,129 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16118,347,786 - 118,386,201 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6118,347,786 - 118,386,193 (+)Ensemblpanpan1.1panPan2
DSE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,787,809 - 56,868,037 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,787,256 - 56,867,716 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,582,066 - 57,663,169 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,968,684 - 57,049,831 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,970,002 - 57,049,003 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,863,004 - 56,944,320 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,711,289 - 56,792,471 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,340,083 - 57,421,210 (+)NCBIUU_Cfam_GSD_1.0
Dse
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946107,182,424 - 107,270,334 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936824957,848 - 995,260 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936824957,783 - 995,465 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DSE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl181,934,679 - 82,062,982 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1181,996,894 - 82,063,847 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2192,246,856 - 92,286,951 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DSE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11357,377,001 - 57,447,589 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1357,376,922 - 57,446,395 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604029,700,879 - 29,770,895 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dse
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248562,012,459 - 2,054,703 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248561,990,967 - 2,100,162 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dse
1933 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:171
Interacting mature miRNAs:177
Transcripts:ENSMUST00000048010
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
10755518Chol16_mcholesterol 16 (mouse)101891504352915043Mouse
1302160Mbis2_mMycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)Not determined102028318556031223Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
26884394Humsd3_mhumerus midshaft diameter 3, 10 week (mouse)102237589951076096Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
4142209Psrs1_mpsoriasis susceptibility 1 (mouse)Not determined102689026446720483Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102972040363720483Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103097449964974630Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103157713665577284Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103377599670835830Mouse

Markers in Region
D10Mit252  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381034,160,550 - 34,160,821UniSTSGRCm38
MGSCv371033,880,356 - 33,880,627UniSTSGRCm37
Celera1035,070,284 - 35,070,555UniSTS
Cytogenetic Map10B1UniSTS
cM Map1023.0UniSTS
Whitehead Genetic1017.5UniSTS
Whitehead_YAC10 UniSTS
AI480506  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381034,151,521 - 34,151,648UniSTSGRCm38
MGSCv371033,871,327 - 33,871,454UniSTSGRCm37
Celera1035,061,255 - 35,061,382UniSTS
Cytogenetic Map10B1UniSTS
Whitehead/MRC_RH10390.45UniSTS
UniSTS:236325  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381034,151,390 - 34,151,630UniSTSGRCm38
MGSCv371033,871,196 - 33,871,436UniSTSGRCm37
Celera1035,061,124 - 35,061,364UniSTS
Cytogenetic Map10B1UniSTS
UniSTS:236327  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381034,185,823 - 34,186,100UniSTSGRCm38
MGSCv371033,905,629 - 33,905,906UniSTSGRCm37
Celera1035,095,556 - 35,095,833UniSTS
Cytogenetic Map10B1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_172508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ269977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000048010   ⟹   ENSMUSP00000040074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1034,027,389 - 34,083,711 (-)Ensembl
GRCm38.p6 Ensembl1034,151,393 - 34,207,715 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215547   ⟹   ENSMUSP00000149947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1034,038,859 - 34,083,631 (-)Ensembl
GRCm38.p6 Ensembl1034,162,863 - 34,207,635 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216194
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1034,060,131 - 34,083,073 (-)Ensembl
GRCm38.p6 Ensembl1034,184,135 - 34,207,077 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1034,029,838 - 34,031,260 (-)Ensembl
GRCm38.p6 Ensembl1034,153,842 - 34,155,264 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217051   ⟹   ENSMUSP00000150789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1034,029,620 - 34,052,241 (-)Ensembl
GRCm38.p6 Ensembl1034,153,624 - 34,176,245 (-)Ensembl
RefSeq Acc Id: NM_172508   ⟹   NP_766096
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391034,027,385 - 34,083,231 (-)NCBI
GRCm381034,151,389 - 34,207,235 (-)NCBI
MGSCv371033,871,199 - 33,927,357 (-)RGD
Celera1035,061,127 - 35,117,279 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512651   ⟹   XP_006512714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391034,027,488 - 34,084,267 (-)NCBI
GRCm381034,151,492 - 34,208,282 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512652   ⟹   XP_006512715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391034,027,386 - 34,083,825 (-)NCBI
GRCm381034,151,390 - 34,207,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243156   ⟹   XP_011241458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391034,027,488 - 34,062,761 (-)NCBI
GRCm381034,151,492 - 34,186,766 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155722   ⟹   XP_036011615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391034,027,488 - 34,083,068 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155723   ⟹   XP_036011616
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391034,027,386 - 34,038,814 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_766096   ⟸   NM_172508
- Peptide Label: precursor
- UniProtKB: Q3U620 (UniProtKB/Swiss-Prot),   Q8BLI4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512714   ⟸   XM_006512651
- Peptide Label: isoform X1
- UniProtKB: Q3U620 (UniProtKB/Swiss-Prot),   Q8BLI4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512715   ⟸   XM_006512652
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011241458   ⟸   XM_011243156
- Peptide Label: isoform X1
- UniProtKB: Q3U620 (UniProtKB/Swiss-Prot),   Q8BLI4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000150789   ⟸   ENSMUST00000217051
RefSeq Acc Id: ENSMUSP00000040074   ⟸   ENSMUST00000048010
RefSeq Acc Id: ENSMUSP00000149947   ⟸   ENSMUST00000215547
RefSeq Acc Id: XP_036011616   ⟸   XM_036155723
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036011615   ⟸   XM_036155722
- Peptide Label: isoform X1
- UniProtKB: Q8BLI4 (UniProtKB/Swiss-Prot),   Q3U620 (UniProtKB/Swiss-Prot)
Protein Domains
Heparinase II N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BLI4-F1-model_v2 AlphaFold Q8BLI4 1-958 view protein structure

Promoters
RGD ID:6819210
Promoter ID:MM_KWN:3889
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Liver,   MEF_B6
Transcripts:ENSMUST00000048010
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361033,926,901 - 33,928,102 (-)MPROMDB
RGD ID:8671776
Promoter ID:EPDNEW_M13919
Type:initiation region
Name:Dse_1
Description:Mus musculus dermatan sulfate epimerase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13920  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381034,207,219 - 34,207,279EPDNEW
RGD ID:8671778
Promoter ID:EPDNEW_M13920
Type:initiation region
Name:Dse_2
Description:Mus musculus dermatan sulfate epimerase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13919  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381034,207,464 - 34,207,524EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443455 AgrOrtholog
Ensembl Genes ENSMUSG00000039497 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048010 ENTREZGENE
  ENSMUST00000048010.9 UniProtKB/Swiss-Prot
  ENSMUST00000215547.2 UniProtKB/TrEMBL
  ENSMUST00000217051.2 UniProtKB/TrEMBL
Gene3D-CATH 1.50.10.100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.70.98.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chondroitin_lyas UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HepII_N UniProtKB/TrEMBL
KEGG Report mmu:212898 UniProtKB/Swiss-Prot
MGD MGI:2443455 ENTREZGENE
NCBI Gene 212898 ENTREZGENE
PANTHER DERMATAN-SULFATE EPIMERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15532 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4962 UniProtKB/TrEMBL
PhenoGen Dse PhenoGen
Superfamily-SCOP SSF48230 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SSJ9_MOUSE UniProtKB/TrEMBL
  A0A1L1SUI1_MOUSE UniProtKB/TrEMBL
  DSE_MOUSE UniProtKB/Swiss-Prot
  Q3U620 ENTREZGENE
  Q8BLI4 ENTREZGENE
UniProt Secondary Q3U620 UniProtKB/Swiss-Prot