Rdh13 (retinol dehydrogenase 13 (all-trans and 9-cis)) - Rat Genome Database

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Gene: Rdh13 (retinol dehydrogenase 13 (all-trans and 9-cis)) Mus musculus
Analyze
Symbol: Rdh13
Name: retinol dehydrogenase 13 (all-trans and 9-cis)
RGD ID: 1312702
MGI Page MGI
Description: Predicted to enable all-trans-retinol dehydrogenase (NADP+) activity. Acts upstream of or within eye photoreceptor cell development; response to high light intensity; and retina layer formation. Located in mitochondrion. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human RDH13 (retinol dehydrogenase 13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 8430425D21Rik; retinol dehydrogenase 13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,428,664 - 4,474,279 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,427,769 - 4,448,648 (-)EnsemblGRCm39 Ensembl
GRCm3874,425,665 - 4,471,280 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,424,770 - 4,445,649 (-)EnsemblGRCm38mm10GRCm38
MGSCv3774,377,267 - 4,397,259 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,028,754 - 4,048,696 (-)NCBIMGSCv36mm8
Celera74,175,108 - 4,195,097 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18614015   PMID:20562862   PMID:21873635  
PMID:22605914   PMID:27113764   PMID:28378742   PMID:29656332   PMID:32325033   PMID:32581705   PMID:36114006  


Genomics

Comparative Map Data
Rdh13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,428,664 - 4,474,279 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,427,769 - 4,448,648 (-)EnsemblGRCm39 Ensembl
GRCm3874,425,665 - 4,471,280 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,424,770 - 4,445,649 (-)EnsemblGRCm38mm10GRCm38
MGSCv3774,377,267 - 4,397,259 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,028,754 - 4,048,696 (-)NCBIMGSCv36mm8
Celera74,175,108 - 4,195,097 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.56NCBI
RDH13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,039,103 - 55,069,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,039,108 - 55,071,291 (-)EnsemblGRCh38hg38GRCh38
GRCh371955,555,684 - 55,580,888 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,247,519 - 60,272,709 (-)NCBINCBI36Build 36hg18NCBI36
Build 341960,247,522 - 60,272,709NCBI
Celera1952,595,491 - 52,620,880 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1951,879,124 - 51,904,646 (-)NCBIHuRef
CHM1_11955,549,512 - 55,574,991 (-)NCBICHM1_1
T2T-CHM13v2.01958,133,057 - 58,164,455 (-)NCBIT2T-CHM13v2.0
Rdh13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,415,765 - 78,444,116 (+)NCBIGRCr8
mRatBN7.2169,373,014 - 69,401,454 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,373,113 - 69,400,908 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx174,732,033 - 74,759,827 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0183,296,338 - 83,324,132 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,445,981 - 76,467,129 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,956,017 - 72,983,811 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,956,026 - 72,984,350 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0175,563,122 - 75,590,916 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4168,102,308 - 68,130,102 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1168,180,552 - 68,206,726 (+)NCBI
Celera167,727,709 - 67,754,934 (-)NCBICelera
Cytogenetic Map1q12NCBI
Rdh13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555671,091,636 - 1,108,732 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555671,091,636 - 1,108,648 (+)NCBIChiLan1.0ChiLan1.0
RDH13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,164,188 - 61,202,316 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,893,564 - 62,931,725 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,081,674 - 52,107,781 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11960,776,108 - 60,801,313 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1960,776,114 - 60,794,267 (-)Ensemblpanpan1.1panPan2
RDH13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,539,363 - 102,552,749 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,539,124 - 102,554,027 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,596,419 - 102,609,782 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,192,952 - 103,206,329 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,192,925 - 103,207,630 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,829,842 - 102,843,203 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,541,523 - 102,554,897 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,305,733 - 103,319,108 (+)NCBIUU_Cfam_GSD_1.0
Rdh13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,190,702 - 2,203,203 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936886355,879 - 368,608 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936886356,068 - 368,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RDH13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,274,387 - 59,292,765 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1659,274,383 - 59,293,139 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RDH13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,634,909 - 47,652,829 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl647,636,094 - 47,652,772 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045190,278 - 206,824 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rdh13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,141,902 - 2,159,009 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,141,906 - 2,159,009 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rdh13
1370 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2266
Count of miRNA genes:822
Interacting mature miRNAs:1073
Transcripts:ENSMUST00000008579, ENSMUST00000119485, ENSMUST00000128299, ENSMUST00000138798, ENSMUST00000147599, ENSMUST00000154033
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse

Markers in Region
Rdh13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A1UniSTS
cM Map7 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030241976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030241977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030241978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030241979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030241980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030241981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY083213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY352329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000008579   ⟹   ENSMUSP00000008579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,428,666 - 4,448,648 (-)Ensembl
GRCm38.p6 Ensembl74,425,667 - 4,445,649 (-)Ensembl
RefSeq Acc Id: ENSMUST00000119485   ⟹   ENSMUSP00000113433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,427,769 - 4,448,600 (-)Ensembl
GRCm38.p6 Ensembl74,424,770 - 4,445,601 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,445,650 - 4,448,641 (-)Ensembl
GRCm38.p6 Ensembl74,442,651 - 4,445,642 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138798   ⟹   ENSMUSP00000114390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,438,032 - 4,448,180 (-)Ensembl
GRCm38.p6 Ensembl74,435,033 - 4,445,181 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,443,406 - 4,448,592 (-)Ensembl
GRCm38.p6 Ensembl74,440,407 - 4,445,593 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,447,201 - 4,448,625 (-)Ensembl
GRCm38.p6 Ensembl74,444,202 - 4,445,626 (-)Ensembl
RefSeq Acc Id: NM_001290409   ⟹   NP_001277338
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,664 - 4,448,656 (-)NCBI
GRCm3874,425,665 - 4,445,657 (-)NCBI
Celera74,175,108 - 4,195,097 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001290411   ⟹   NP_001277340
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,664 - 4,448,656 (-)NCBI
GRCm3874,425,665 - 4,445,657 (-)NCBI
Celera74,175,108 - 4,195,097 (-)NCBI
Sequence:
RefSeq Acc Id: NM_175372   ⟹   NP_780581
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,664 - 4,448,656 (-)NCBI
GRCm3874,425,665 - 4,445,657 (-)NCBI
MGSCv3774,377,267 - 4,397,259 (-)RGD
Celera74,175,108 - 4,195,097 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011250412   ⟹   XP_011248714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,474,279 (-)NCBI
GRCm3874,425,667 - 4,471,280 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030241976   ⟹   XP_030097836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,842 (-)NCBI
GRCm3874,425,667 - 4,445,843 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030241977   ⟹   XP_030097837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,198 (-)NCBI
GRCm3874,425,667 - 4,445,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030241978   ⟹   XP_030097838
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,843 (-)NCBI
GRCm3874,425,667 - 4,445,844 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030241979   ⟹   XP_030097839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,843 (-)NCBI
GRCm3874,425,667 - 4,445,844 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030241980   ⟹   XP_030097840
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,842 (-)NCBI
GRCm3874,425,667 - 4,445,843 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030241981   ⟹   XP_030097841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,843 (-)NCBI
GRCm3874,425,667 - 4,445,844 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152564   ⟹   XP_036008457
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,474,243 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152565   ⟹   XP_036008458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,394 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152566   ⟹   XP_036008459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,539 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152567   ⟹   XP_036008460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,843 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152568   ⟹   XP_036008461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,428,666 - 4,448,843 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_780581   ⟸   NM_175372
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8CC07 (UniProtKB/Swiss-Prot),   Q8CEE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277338   ⟸   NM_001290409
- Peptide Label: isoform 2 precursor
- UniProtKB: A0A0R4J1N8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277340   ⟸   NM_001290411
- Peptide Label: isoform 3
- UniProtKB: Q8CEE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011248714   ⟸   XM_011250412
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030097839   ⟸   XM_030241979
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030097838   ⟸   XM_030241978
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030097841   ⟸   XM_030241981
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030097840   ⟸   XM_030241980
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030097836   ⟸   XM_030241976
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030097837   ⟸   XM_030241977
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000113433   ⟸   ENSMUST00000119485
RefSeq Acc Id: ENSMUSP00000114390   ⟸   ENSMUST00000138798
RefSeq Acc Id: ENSMUSP00000008579   ⟸   ENSMUST00000008579
RefSeq Acc Id: XP_036008457   ⟸   XM_036152564
- Peptide Label: isoform X1
- UniProtKB: Q8CEE7 (UniProtKB/Swiss-Prot),   Q8CC07 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036008460   ⟸   XM_036152567
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036008461   ⟸   XM_036152568
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036008459   ⟸   XM_036152566
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036008458   ⟸   XM_036152565
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CEE7-F1-model_v2 AlphaFold Q8CEE7 1-334 view protein structure

Promoters
RGD ID:6841914
Promoter ID:MM_KWN:48442
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_175372,   OTTMUST00000054642,   OTTMUST00000054643,   OTTMUST00000054644,   OTTMUST00000054645,   UC009EXL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3674,396,821 - 4,397,321 (-)MPROMDB
RGD ID:6891672
Promoter ID:EPDNEW_M9286
Type:initiation region
Name:Rdh13_1
Description:Mus musculus retinol dehydrogenase 13 (all-trans and 9-cis) ,transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3874,445,649 - 4,445,709EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918732 AgrOrtholog
Ensembl Genes ENSMUSG00000008435 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000008579 ENTREZGENE
  ENSMUST00000008579.14 UniProtKB/Swiss-Prot
  ENSMUST00000119485 ENTREZGENE
  ENSMUST00000119485.8 UniProtKB/TrEMBL
  ENSMUST00000138798.2 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SDR_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:108841 UniProtKB/Swiss-Prot
MGD MGI:1918732 ENTREZGENE
NCBI Gene 108841 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED UniProtKB/Swiss-Prot
  PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED UniProtKB/Swiss-Prot
  PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED UniProtKB/TrEMBL
  PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED UniProtKB/TrEMBL
Pfam adh_short UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rdh13 PhenoGen
PRINTS GDHRDH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/Swiss-Prot
PROSITE ADH_SHORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J1N8 ENTREZGENE, UniProtKB/TrEMBL
  D3YVJ8_MOUSE UniProtKB/TrEMBL
  Q8CC07 ENTREZGENE
  Q8CEE7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8CC07 UniProtKB/Swiss-Prot