Pilra (paired immunoglobin like type 2 receptor alpha) - Rat Genome Database

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Gene: Pilra (paired immunoglobin like type 2 receptor alpha) Ictidomys tridecemlineatus
Analyze
Symbol: Pilra
Name: paired immunoglobin like type 2 receptor alpha
RGD ID: 12734690
Description: ENCODES a protein that exhibits MHC class I protein binding (inferred); INVOLVED IN signal transduction (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cell periphery (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: paired immunoglobulin-like type 2 receptor alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,554,300 - 133,564,026 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936543472,520 - 482,147 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell periphery  (IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pilra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,554,300 - 133,564,026 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936543472,520 - 482,147 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PILRA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,371,291 - 100,400,096 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,367,530 - 100,400,096 (+)EnsemblGRCh38hg38GRCh38
GRCh37799,971,110 - 99,997,719 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,809,004 - 99,835,658 (+)NCBINCBI36Build 36hg18NCBI36
Celera794,700,868 - 94,727,521 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,604,603 - 94,631,320 (+)NCBIHuRef
CHM1_1799,901,704 - 99,928,336 (+)NCBICHM1_1
T2T-CHM13v2.07101,611,370 - 101,640,173 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,331,154 - 99,357,807 (+)NCBI
Pilra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,820,214 - 137,834,540 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5137,820,214 - 137,834,543 (-)EnsemblGRCm39 Ensembl
GRCm385137,821,952 - 137,836,278 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,821,952 - 137,836,281 (-)EnsemblGRCm38mm10GRCm38
MGSCv375138,263,180 - 138,277,506 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365136,539,538 - 136,552,953 (-)NCBIMGSCv36mm8
MGSCv365138,053,176 - 138,075,341 (-)NCBIMGSCv36mm8
Celera5134,808,357 - 134,844,859 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.77NCBI
Pilra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81223,452,626 - 23,464,772 (+)NCBIGRCr8
mRatBN7.21217,787,169 - 17,798,149 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,787,127 - 17,798,094 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1219,635,530 - 19,649,075 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01220,259,246 - 20,272,791 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01219,324,080 - 19,337,625 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,678,550 - 21,689,821 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,678,580 - 21,690,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,699,427 - 23,711,607 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,993,748 - 20,006,782 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1220,672,244 - 20,686,137 (+)NCBICelera
Cytogenetic Map12q12NCBI
Pilra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955573553,631 - 560,301 (-)NCBIChiLan1.0ChiLan1.0
LOC103782679
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,248,997 - 118,313,349 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,513,673 - 166,577,981 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,364,862 - 92,429,017 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,780,152 - 105,799,279 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,805,106 - 105,831,142 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl7105,805,106 - 105,831,142 (+)NCBIpanpan1.1panPan2
PILRA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,271,761 - 9,289,374 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,973,591 - 10,992,596 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,205,484 - 9,222,778 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.169,057,984 - 9,075,548 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,035,043 - 9,052,330 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,217,961 - 9,235,564 (-)NCBIUU_Cfam_GSD_1.0
LOC100514951
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.138,045,304 - 8,061,902 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,284,993 - 7,431,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PILRA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660703,461,158 - 3,485,773 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pilra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474016,669,709 - 16,688,110 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013360051   ⟹   XP_013215505
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344133,554,301 - 133,564,020 (-)NCBI
SpeTri2.0NW_004936543472,520 - 482,147 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040276944   ⟹   XP_040132878
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344133,554,300 - 133,564,026 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013215505 (Get FASTA)   NCBI Sequence Viewer  
  XP_040132878 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017737.2
GenBank Protein KAG3259917 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013215505   ⟸   XM_013360051
- Peptide Label: isoform X1
- UniProtKB: I3N041 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040132878   ⟸   XM_040276944
- Peptide Label: isoform X2
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028480 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029543.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene Pilra ENTREZGENE
PANTHER PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR UniProtKB/TrEMBL
  PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR ALPHA-RELATED UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt I3N041 ENTREZGENE, UniProtKB/TrEMBL