Ubc (ubiquitin C) - Rat Genome Database

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Gene: Ubc (ubiquitin C) Ictidomys tridecemlineatus
Analyze
Symbol: Ubc
Name: ubiquitin C
RGD ID: 12724534
Description: ASSOCIATED WITH COVID-19 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polyubiquitin-C
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118159,015,205 - 159,018,452 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936558461,033 - 464,222 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ubc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118159,015,205 - 159,018,452 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936558461,033 - 464,222 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812124,911,646 - 124,914,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12124,911,604 - 124,917,368 (-)EnsemblGRCh38hg38GRCh38
GRCh3712125,396,192 - 125,399,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612123,962,145 - 123,965,530 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412123,921,073 - 123,924,077NCBI
Celera12124,997,873 - 125,000,802 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12122,358,235 - 122,361,174 (-)NCBIHuRef
CHM1_112125,217,624 - 125,221,019 (-)NCBICHM1_1
T2T-CHM13v2.012124,916,854 - 124,919,858 (-)NCBIT2T-CHM13v2.0
Ubc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395125,463,029 - 125,467,081 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5125,463,029 - 125,467,266 (-)EnsemblGRCm39 Ensembl
GRCm385125,385,965 - 125,390,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5125,385,965 - 125,390,202 (-)EnsemblGRCm38mm10GRCm38
MGSCv375125,866,335 - 125,870,387 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,675,482 - 125,679,691 (-)NCBIMGSCv36mm8
Celera5122,405,521 - 122,411,999 (-)NCBICelera
Cytogenetic Map5G1.1NCBI
cM Map564.18NCBI
Ubc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81236,899,673 - 36,905,275 (+)NCBIGRCr8
mRatBN7.21231,239,149 - 31,243,924 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,239,152 - 31,243,925 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1232,412,823 - 32,415,121 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,024,248 - 33,026,546 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,076,179 - 32,078,249 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01236,638,457 - 36,642,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1236,638,457 - 36,642,734 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01238,515,117 - 38,520,066 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41232,333,211 - 32,337,944 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,196,598 - 32,201,332 (+)NCBI
Celera1232,933,657 - 32,936,338 (+)NCBICelera
Cytogenetic Map12q15NCBI
UBC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210132,995,718 - 132,999,939 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112132,992,096 - 132,998,965 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012122,502,868 - 122,507,101 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112126,789,228 - 126,793,343 (-)NCBIpanpan1.1PanPan1.1panPan2
UBC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,006,375 - 5,008,570 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,165,853 - 5,168,506 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0265,251,876 - 5,254,989 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1265,186,495 - 5,189,830 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,278,119 - 5,281,494 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0265,230,046 - 5,233,383 (+)NCBIUU_Cfam_GSD_1.0
UBC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1428,257,027 - 28,263,044 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11428,253,857 - 28,260,771 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21429,958,861 - 29,961,533 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q12-q15NCBI
UBC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111120,277,855 - 120,279,553 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037125,003,711 - 125,007,003 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021729258   ⟹   XP_021584933
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118159,015,205 - 159,018,452 (-)NCBI
SpeTri2.0NW_004936558461,033 - 464,222 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040289581   ⟹   XP_040145515
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118159,015,205 - 159,017,862 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021584933 (Get FASTA)   NCBI Sequence Viewer  
  XP_040145515 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3279191 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021584933   ⟸   XM_021729258
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040145515   ⟸   XM_040289581
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene Ubc ENTREZGENE