Slc35g1 (solute carrier family 35 member G1) - Rat Genome Database

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Gene: Slc35g1 (solute carrier family 35 member G1) Ictidomys tridecemlineatus
Analyze
Symbol: Slc35g1
Name: solute carrier family 35 member G1
RGD ID: 12705852
Description: INVOLVED IN calcium ion export across plasma membrane (inferred); regulation of cytosolic calcium ion concentration (inferred); ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,539,163 - 39,549,248 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366011,170,777 - 1,181,960 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366011,171,542 - 1,181,699 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc35g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,539,163 - 39,549,248 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366011,170,777 - 1,181,960 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366011,171,542 - 1,181,699 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35G1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381093,893,978 - 93,909,830 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1093,893,973 - 93,956,062 (+)EnsemblGRCh38hg38GRCh38
GRCh371095,653,735 - 95,669,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361095,643,720 - 95,652,480 (+)NCBINCBI36Build 36hg18NCBI36
Build 341095,643,719 - 95,652,480NCBI
Celera1089,393,872 - 89,402,633 (+)NCBICelera
Cytogenetic Map10q23.33NCBI
HuRef1089,280,458 - 89,289,217 (+)NCBIHuRef
CHM1_11095,935,595 - 95,944,354 (+)NCBICHM1_1
T2T-CHM13v2.01094,773,053 - 94,788,891 (+)NCBIT2T-CHM13v2.0
Slc35g1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391938,384,428 - 38,394,055 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1938,384,428 - 38,394,058 (+)EnsemblGRCm39 Ensembl
GRCm381938,395,980 - 38,405,607 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1938,395,980 - 38,405,610 (+)EnsemblGRCm38mm10GRCm38
MGSCv371938,470,470 - 38,480,097 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361938,461,124 - 38,470,751 (+)NCBIMGSCv36mm8
Celera1939,188,137 - 39,193,307 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1933.03NCBI
Slc35g1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81245,576,011 - 245,584,533 (+)NCBIGRCr8
mRatBN7.21236,163,593 - 236,172,115 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1236,163,175 - 236,170,262 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,586,084 - 244,592,520 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01251,480,841 - 251,487,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,319,095 - 244,325,529 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01257,076,221 - 257,082,655 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1257,076,221 - 257,082,655 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01264,556,961 - 264,563,395 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,713,535 - 242,719,969 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1233,256,993 - 233,263,274 (+)NCBICelera
Cytogenetic Map1q53NCBI
Slc35g1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955507423,351 - 428,051 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955507423,354 - 428,051 (+)NCBIChiLan1.0ChiLan1.0
SLC35G1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28105,931,348 - 105,986,626 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110105,936,663 - 105,991,850 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01090,641,079 - 90,696,621 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11094,152,493 - 94,162,201 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1094,152,493 - 94,162,201 (+)Ensemblpanpan1.1panPan2
SLC35G1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1288,080,614 - 8,091,347 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha288,256,548 - 8,267,456 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0288,340,692 - 8,351,613 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1288,060,062 - 8,070,433 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0288,089,729 - 8,100,111 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0288,259,479 - 8,270,398 (+)NCBIUU_Cfam_GSD_1.0
SLC35G1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14105,335,160 - 105,345,274 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114105,335,063 - 105,345,277 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214115,066,444 - 115,076,760 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35G1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1987,127,367 - 87,137,526 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604847,909,760 - 47,926,068 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35g1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247375,177,500 - 5,185,834 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247375,177,430 - 5,188,248 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014147   ⟹   ENSSTOP00000019099
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366011,170,777 - 1,181,960 (-)Ensembl
RefSeq Acc Id: XM_013362118   ⟹   XP_013217572
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721339,539,163 - 39,549,248 (-)NCBI
SpeTri2.0NW_0049366011,171,542 - 1,181,699 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040272645   ⟹   XP_040128579
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721339,539,163 - 39,549,114 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013217572 (Get FASTA)   NCBI Sequence Viewer  
  XP_040128579 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019099.2
GenBank Protein KAG3264474 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013217572   ⟸   XM_013362118
- Peptide Label: isoform X2
- UniProtKB: I3N403 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040128579   ⟸   XM_040272645
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000019099   ⟸   ENSSTOT00000014147
Protein Domains
EamA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014149 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014147.3 UniProtKB/TrEMBL
InterPro EamA_dom UniProtKB/TrEMBL
NCBI Gene Slc35g1 ENTREZGENE
PANTHER ACYL-MALONYL CONDENSING ENZYME-RELATED UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35 MEMBER G1 UniProtKB/TrEMBL
Pfam EamA UniProtKB/TrEMBL
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/TrEMBL
UniProt I3N403 ENTREZGENE, UniProtKB/TrEMBL