Ticrr (TOPBP1 interacting checkpoint and replication regulator) - Rat Genome Database

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Gene: Ticrr (TOPBP1 interacting checkpoint and replication regulator) Ictidomys tridecemlineatus
Analyze
Symbol: Ticrr
Name: TOPBP1 interacting checkpoint and replication regulator
RGD ID: 12686516
Description: ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN regulation of DNA-templated DNA replication initiation (ortholog); ASSOCIATED WITH acrocallosal syndrome (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: treslin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,911,256 - 130,953,159 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648315,381,486 - 15,422,600 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ticrr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,911,256 - 130,953,159 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648315,381,486 - 15,422,600 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TICRR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,575,469 - 89,628,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,575,469 - 89,631,056 (+)EnsemblGRCh38hg38GRCh38
GRCh371590,118,700 - 90,171,254 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361587,919,822 - 87,972,258 (+)NCBINCBI36Build 36hg18NCBI36
Celera1566,521,348 - 66,573,839 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,231,687 - 66,284,363 (+)NCBIHuRef
CHM1_11589,959,812 - 90,012,225 (+)NCBICHM1_1
T2T-CHM13v2.01587,331,418 - 87,383,956 (+)NCBIT2T-CHM13v2.0
Ticrr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,309,944 - 79,347,896 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,309,944 - 79,347,896 (+)EnsemblGRCm39 Ensembl
GRCm38779,660,196 - 79,698,148 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,660,196 - 79,698,148 (+)EnsemblGRCm38mm10GRCm38
MGSCv37786,805,082 - 86,843,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36779,533,709 - 79,571,661 (+)NCBIMGSCv36mm8
Celera777,067,037 - 77,096,906 (+)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.09NCBI
Ticrr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,006,989 - 143,048,836 (+)NCBIGRCr8
mRatBN7.21133,597,618 - 133,639,513 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,597,716 - 133,639,523 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01141,391,738 - 141,433,615 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,391,262 - 141,433,109 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01142,352,601 - 142,394,553 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,428,695 - 135,471,349 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11135,514,671 - 135,549,760 (+)NCBI
Celera1125,660,602 - 125,703,125 (+)NCBICelera
Cytogenetic Map1q31NCBI
Ticrr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,572,331 - 15,615,603 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,572,789 - 15,615,556 (-)NCBIChiLan1.0ChiLan1.0
TICRR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21679,126,016 - 79,178,208 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11582,830,314 - 82,882,473 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01568,270,029 - 68,322,201 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11587,476,738 - 87,528,875 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1587,476,738 - 87,528,870 (+)Ensemblpanpan1.1panPan2
TICRR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,584,913 - 52,629,731 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,584,454 - 52,629,164 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,218,464 - 55,263,804 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,000,604 - 53,046,170 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,000,601 - 53,046,153 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,522,964 - 52,568,260 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,733,097 - 52,778,304 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,073,123 - 53,118,437 (+)NCBIUU_Cfam_GSD_1.0
TICRR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,143,240 - 55,200,640 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,142,957 - 55,200,259 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TICRR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1298,117,198 - 8,171,956 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605938,641,216 - 38,695,171 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ticrr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476816,670,390 - 16,715,697 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476816,669,847 - 16,716,335 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005320133   ⟹   XP_005320190
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640130,911,256 - 130,953,159 (-)NCBI
SpeTri2.0NW_00493648315,381,486 - 15,422,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040275464   ⟹   XP_040131398
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640130,911,256 - 130,953,159 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005320190 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131398 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3262580 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005320190   ⟸   XM_005320133
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040131398   ⟸   XM_040275464
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene Ticrr ENTREZGENE