Stag1 (STAG1 cohesin complex component) - Rat Genome Database

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Gene: Stag1 (STAG1 cohesin complex component) Ictidomys tridecemlineatus
Analyze
Symbol: Stag1
Name: STAG1 cohesin complex component (Ensembl:stromal antigen 1)
RGD ID: 12684787
Description: ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN cell division (inferred); chromosome segregation (inferred); mitotic spindle assembly (inferred); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 47 (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN chromatin (inferred); chromosome (inferred); chromosome, centromeric region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cohesin subunit SA-1; stromal antigen 1; stromal antigen 1, transcript variant X1; stromal antigen 1, transcript variant X2; stromal antigen 1, transcript variant X3; stromal antigen 1, transcript variant X4; stromal antigen 1, transcript variant X5; stromal antigen 1, transcript variant X6; stromal antigen 1, transcript variant X7; stromal antigen 1, transcript variant X8; stromal antigen 1, transcript variant X9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560272,412,665 - 72,769,849 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365299,172,166 - 9,530,304 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365299,173,162 - 9,530,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Stag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560272,412,665 - 72,769,849 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365299,172,166 - 9,530,304 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365299,173,162 - 9,530,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383136,336,236 - 136,752,378 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3136,336,236 - 136,752,403 (-)EnsemblGRCh38hg38GRCh38
GRCh373136,055,078 - 136,471,220 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363137,538,689 - 137,953,935 (-)NCBINCBI36Build 36hg18NCBI36
Build 343137,539,634 - 137,953,907NCBI
Celera3134,481,201 - 134,897,660 (-)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3133,432,986 - 133,848,794 (-)NCBIHuRef
CHM1_13136,019,532 - 136,434,908 (-)NCBICHM1_1
T2T-CHM13v2.03139,076,901 - 139,493,092 (-)NCBIT2T-CHM13v2.0
Stag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399100,479,762 - 100,840,597 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9100,479,851 - 100,841,428 (+)EnsemblGRCm39 Ensembl
GRCm389100,597,709 - 100,958,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9100,597,798 - 100,959,375 (+)EnsemblGRCm38mm10GRCm38
MGSCv379100,544,042 - 100,858,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369100,452,975 - 100,767,896 (+)NCBIMGSCv36mm8
Celera9100,181,961 - 100,493,069 (+)NCBICelera
Cytogenetic Map9E3.3- E4NCBI
cM Map952.77NCBI
Stag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88110,057,981 - 110,443,666 (+)NCBIGRCr8
mRatBN7.28101,179,039 - 101,564,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8106,843,035 - 107,226,697 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08105,042,380 - 105,426,017 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08102,884,916 - 103,268,547 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08108,958,099 - 109,342,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8108,958,046 - 109,342,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08108,373,849 - 108,760,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48105,524,756 - 105,919,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18105,630,998 - 105,937,601 (+)NCBI
Celera8100,575,837 - 100,956,349 (+)NCBICelera
Cytogenetic Map8q31NCBI
Stag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555012,173,695 - 2,465,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555012,070,614 - 2,465,339 (+)NCBIChiLan1.0ChiLan1.0
STAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22134,265,633 - 134,673,022 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13134,270,361 - 134,677,749 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03133,388,783 - 133,795,985 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13140,852,107 - 141,138,138 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3140,852,107 - 141,138,138 (-)Ensemblpanpan1.1panPan2
STAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12332,786,730 - 33,126,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2332,788,693 - 33,063,242 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2332,771,605 - 33,164,943 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02333,315,839 - 33,709,912 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2333,317,464 - 33,709,915 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12332,998,600 - 33,392,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02333,065,872 - 33,458,349 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02333,309,556 - 33,702,917 (-)NCBIUU_Cfam_GSD_1.0
STAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1377,321,872 - 77,863,491 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11377,321,872 - 77,863,533 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21384,691,737 - 84,783,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STAG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11553,706,847 - 54,103,712 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1553,706,974 - 54,101,707 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604126,751,454 - 27,153,053 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stag1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473012,761,460 - 13,086,965 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473012,762,099 - 13,158,603 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021727574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000013953   ⟹   ENSSTOP00000012503
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365299,172,166 - 9,530,304 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041804   ⟹   ENSSTOP00000028122
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365299,172,166 - 9,530,304 (-)Ensembl
RefSeq Acc Id: XM_005327048   ⟹   XP_005327105
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,769,848 (-)NCBI
SpeTri2.0NW_0049365299,173,162 - 9,530,321 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021727573   ⟹   XP_021583248
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,584,914 (-)NCBI
SpeTri2.0NW_0049365299,173,162 - 9,345,894 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021727574   ⟹   XP_021583249
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,555,278 (-)NCBI
SpeTri2.0NW_0049365299,173,162 - 9,315,763 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040269834   ⟹   XP_040125768
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,769,848 (-)NCBI
RefSeq Acc Id: XM_040269835   ⟹   XP_040125769
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,769,849 (-)NCBI
RefSeq Acc Id: XM_040269836   ⟹   XP_040125770
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,769,847 (-)NCBI
RefSeq Acc Id: XM_040269837   ⟹   XP_040125771
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,653,385 (-)NCBI
RefSeq Acc Id: XM_040269838   ⟹   XP_040125772
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,769,847 (-)NCBI
RefSeq Acc Id: XM_040269839   ⟹   XP_040125773
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,595,093 (-)NCBI
RefSeq Acc Id: XM_040269840   ⟹   XP_040125774
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,769,847 (-)NCBI
RefSeq Acc Id: XM_040269841   ⟹   XP_040125775
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,590,284 (-)NCBI
RefSeq Acc Id: XM_040269842   ⟹   XP_040125776
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,769,845 (-)NCBI
RefSeq Acc Id: XM_040269843   ⟹   XP_040125777
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,769,845 (-)NCBI
RefSeq Acc Id: XM_040269844   ⟹   XP_040125778
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,558,427 (-)NCBI
RefSeq Acc Id: XM_040269845   ⟹   XP_040125779
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560272,412,665 - 72,551,944 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005327105   ⟸   XM_005327048
- Peptide Label: isoform X1
- UniProtKB: I3MM03 (UniProtKB/TrEMBL),   A0A287D3M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583248   ⟸   XM_021727573
- Peptide Label: isoform X4
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583249   ⟸   XM_021727574
- Peptide Label: isoform X6
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125769   ⟸   XM_040269835
- Peptide Label: isoform X2
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125768   ⟸   XM_040269834
- Peptide Label: isoform X1
- UniProtKB: I3MM03 (UniProtKB/TrEMBL),   A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125772   ⟸   XM_040269838
- Peptide Label: isoform X4
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125774   ⟸   XM_040269840
- Peptide Label: isoform X4
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125770   ⟸   XM_040269836
- Peptide Label: isoform X3
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125777   ⟸   XM_040269843
- Peptide Label: isoform X6
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125776   ⟸   XM_040269842
- Peptide Label: isoform X5
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125771   ⟸   XM_040269837
- Peptide Label: isoform X3
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125773   ⟸   XM_040269839
- Peptide Label: isoform X4
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125775   ⟸   XM_040269841
- Peptide Label: isoform X4
- UniProtKB: A0A287D3M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125778   ⟸   XM_040269844
- Peptide Label: isoform X7
RefSeq Acc Id: XP_040125779   ⟸   XM_040269845
- Peptide Label: isoform X7
RefSeq Acc Id: ENSSTOP00000028122   ⟸   ENSSTOT00000041804
RefSeq Acc Id: ENSSTOP00000012503   ⟸   ENSSTOT00000013953
Protein Domains
SCD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013942 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013953.3 UniProtKB/TrEMBL
  ENSSTOT00000041804.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Cohesin_Scc3/SA UniProtKB/TrEMBL
  SCD UniProtKB/TrEMBL
  STAG UniProtKB/TrEMBL
NCBI Gene Stag1 ENTREZGENE
PANTHER COHESIN SUBUNIT SA-1 UniProtKB/TrEMBL
  PTHR11199 UniProtKB/TrEMBL
Pfam SCD UniProtKB/TrEMBL
  STAG UniProtKB/TrEMBL
PROSITE SCD UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A287D3M2 ENTREZGENE, UniProtKB/TrEMBL
  I3MM03 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-25 Stag1  STAG1 cohesin complex component  Stag1  stromal antigen 1  Symbol and/or name change 5135510 APPROVED