Stag1 (STAG1 cohesin complex component) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Stag1 (STAG1 cohesin complex component) Rattus norvegicus
Analyze
Symbol: Stag1
Name: STAG1 cohesin complex component (Ensembl:stromal antigen 1)
RGD ID: 1310744
Description: Predicted to enable chromatin binding activity. Predicted to be involved in localization; mitotic spindle assembly; and sister chromatid cohesion. Predicted to be located in mitotic spindle pole; nuclear body; and nuclear matrix. Predicted to be part of chromatin and cohesin complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 47. Orthologous to human STAG1 (STAG1 cohesin complex component); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cohesin subunit SA-1; LOC315958; stromal antigen 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88110,057,981 - 110,443,666 (+)NCBIGRCr8
mRatBN7.28101,179,039 - 101,564,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8106,843,035 - 107,226,697 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08105,042,380 - 105,426,017 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08102,884,916 - 103,268,547 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08108,958,099 - 109,342,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8108,958,046 - 109,342,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08108,373,849 - 108,760,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48105,524,756 - 105,919,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18105,630,998 - 105,937,601 (+)NCBI
Celera8100,575,837 - 100,956,349 (+)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4-nitrophenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diallyl disulfide  (EXP)
diazinon  (ISO)
dicrotophos  (ISO)
dimercaprol  (ISO)
entinostat  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
gentamycin  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
methimazole  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
oxaliplatin  (EXP)
oxybenzone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (EXP,ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
sulfadimethoxine  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
tremolite asbestos  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11590136   PMID:16682347   PMID:22415368   PMID:22628566   PMID:22780989   PMID:23920377  


Genomics

Comparative Map Data
Stag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88110,057,981 - 110,443,666 (+)NCBIGRCr8
mRatBN7.28101,179,039 - 101,564,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8106,843,035 - 107,226,697 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08105,042,380 - 105,426,017 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08102,884,916 - 103,268,547 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08108,958,099 - 109,342,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8108,958,046 - 109,342,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08108,373,849 - 108,760,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48105,524,756 - 105,919,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18105,630,998 - 105,937,601 (+)NCBI
Celera8100,575,837 - 100,956,349 (+)NCBICelera
Cytogenetic Map8q31NCBI
STAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383136,336,236 - 136,752,378 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3136,336,236 - 136,752,403 (-)EnsemblGRCh38hg38GRCh38
GRCh373136,055,078 - 136,471,220 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363137,538,689 - 137,953,935 (-)NCBINCBI36Build 36hg18NCBI36
Build 343137,539,634 - 137,953,907NCBI
Celera3134,481,201 - 134,897,660 (-)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3133,432,986 - 133,848,794 (-)NCBIHuRef
CHM1_13136,019,532 - 136,434,908 (-)NCBICHM1_1
T2T-CHM13v2.03139,076,901 - 139,493,092 (-)NCBIT2T-CHM13v2.0
Stag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399100,479,762 - 100,840,597 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9100,479,851 - 100,841,428 (+)EnsemblGRCm39 Ensembl
GRCm389100,597,709 - 100,958,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9100,597,798 - 100,959,375 (+)EnsemblGRCm38mm10GRCm38
MGSCv379100,544,042 - 100,858,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369100,452,975 - 100,767,896 (+)NCBIMGSCv36mm8
Celera9100,181,961 - 100,493,069 (+)NCBICelera
Cytogenetic Map9E3.3- E4NCBI
cM Map952.77NCBI
Stag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555012,173,695 - 2,465,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555012,070,614 - 2,465,339 (+)NCBIChiLan1.0ChiLan1.0
STAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22134,265,633 - 134,673,022 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13134,270,361 - 134,677,749 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03133,388,783 - 133,795,985 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13140,852,107 - 141,138,138 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3140,852,107 - 141,138,138 (-)Ensemblpanpan1.1panPan2
STAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12332,786,730 - 33,126,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2332,788,693 - 33,063,242 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2332,771,605 - 33,164,943 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02333,315,839 - 33,709,912 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2333,317,464 - 33,709,915 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12332,998,600 - 33,392,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02333,065,872 - 33,458,349 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02333,309,556 - 33,702,917 (-)NCBIUU_Cfam_GSD_1.0
Stag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560272,412,665 - 72,769,849 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365299,172,166 - 9,530,304 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365299,173,162 - 9,530,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1377,321,872 - 77,863,491 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11377,321,872 - 77,863,533 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21384,691,737 - 84,783,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STAG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11553,706,847 - 54,103,712 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1553,706,974 - 54,101,707 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604126,751,454 - 27,153,053 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stag1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473012,761,460 - 13,086,965 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473012,762,099 - 13,158,603 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stag1
1258 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:666
Count of miRNA genes:283
Interacting mature miRNAs:370
Transcripts:ENSRNOT00000066917
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat

Markers in Region
RH143633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,492,056 - 101,492,280 (+)MAPPERmRatBN7.2
Rnor_6.08109,271,804 - 109,272,027NCBIRnor6.0
Rnor_5.08108,688,889 - 108,689,112UniSTSRnor5.0
RGSC_v3.48105,846,732 - 105,846,955UniSTSRGSC3.4
Celera8100,884,172 - 100,884,395UniSTS
RH 3.4 Map81173.6UniSTS
Cytogenetic Map8q31UniSTS
SHGC-64944  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,564,554 - 101,564,661 (+)MAPPERmRatBN7.2
Rnor_6.08109,342,609 - 109,342,715NCBIRnor6.0
Rnor_5.08108,760,169 - 108,760,275UniSTSRnor5.0
RGSC_v3.48105,919,849 - 105,919,955UniSTSRGSC3.4
Celera8100,956,227 - 100,956,333UniSTS
Cytogenetic Map8q31UniSTS
A009F46  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,563,325 - 101,563,462 (+)MAPPERmRatBN7.2
Rnor_6.08109,341,380 - 109,341,516NCBIRnor6.0
Rnor_5.08108,758,940 - 108,759,076UniSTSRnor5.0
RGSC_v3.48105,918,620 - 105,918,756UniSTSRGSC3.4
Celera8100,954,998 - 100,955,134UniSTS
Cytogenetic Map8q31UniSTS
BI302210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,303,265 - 101,303,429 (+)MAPPERmRatBN7.2
Rnor_6.08109,083,571 - 109,083,734NCBIRnor6.0
Rnor_5.08108,500,329 - 108,500,492UniSTSRnor5.0
RGSC_v3.48105,650,476 - 105,650,639UniSTSRGSC3.4
Celera8100,694,608 - 100,694,771UniSTS
RH 3.4 Map81174.8UniSTS
Cytogenetic Map8q31UniSTS
BE121282  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,287,129 - 101,287,283 (+)MAPPERmRatBN7.2
Rnor_6.08109,067,032 - 109,067,185NCBIRnor6.0
Rnor_5.08108,483,790 - 108,483,943UniSTSRnor5.0
RGSC_v3.48105,634,341 - 105,634,494UniSTSRGSC3.4
Celera8100,678,657 - 100,678,810UniSTS
RH 3.4 Map81175.1UniSTS
Cytogenetic Map8q31UniSTS
G32517  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,563,325 - 101,563,463 (+)MAPPERmRatBN7.2
Rnor_6.08109,341,380 - 109,341,517NCBIRnor6.0
Rnor_5.08108,758,940 - 108,759,077UniSTSRnor5.0
RGSC_v3.48105,918,620 - 105,918,757UniSTSRGSC3.4
Celera8100,954,998 - 100,955,135UniSTS
Cytogenetic Map8q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 44 28 19 28 8 8 72 34 40 11 8
Low 9 13 13 13 3 2 1 1
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000066917   ⟹   ENSRNOP00000061907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)Ensembl
Rnor_6.0 Ensembl8108,958,099 - 109,342,731 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079618   ⟹   ENSRNOP00000074990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)Ensembl
Rnor_6.0 Ensembl8108,958,046 - 109,342,738 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100986   ⟹   ENSRNOP00000076659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109411   ⟹   ENSRNOP00000096619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,179,039 - 101,562,136 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111891   ⟹   ENSRNOP00000078635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,272,293 - 101,564,677 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115852   ⟹   ENSRNOP00000090312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,272,293 - 101,564,677 (+)Ensembl
RefSeq Acc Id: NM_001108179   ⟹   NP_001101649
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,058,056 - 110,443,659 (+)NCBI
mRatBN7.28101,179,039 - 101,564,677 (+)NCBI
Rnor_6.08108,958,099 - 109,342,731 (+)NCBI
Rnor_5.08108,373,849 - 108,760,298 (+)NCBI
RGSC_v3.48105,524,756 - 105,919,971 (+)RGD
Celera8100,575,837 - 100,956,349 (+)RGD
Sequence:
RefSeq Acc Id: XM_006243631   ⟹   XP_006243693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,057,981 - 110,443,666 (+)NCBI
mRatBN7.28101,179,044 - 101,564,684 (+)NCBI
Rnor_6.08108,958,104 - 109,342,738 (+)NCBI
Rnor_5.08108,373,849 - 108,760,298 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243632   ⟹   XP_006243694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,058,089 - 110,443,666 (+)NCBI
mRatBN7.28101,179,070 - 101,564,684 (+)NCBI
Rnor_6.08108,958,141 - 109,342,738 (+)NCBI
Rnor_5.08108,373,849 - 108,760,298 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766528   ⟹   XP_008764750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,058,069 - 110,443,666 (+)NCBI
mRatBN7.28101,179,070 - 101,564,684 (+)NCBI
Rnor_6.08108,958,141 - 109,342,738 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081551   ⟹   XP_038937479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,271,208 - 110,443,666 (+)NCBI
mRatBN7.28101,392,214 - 101,564,684 (+)NCBI
RefSeq Acc Id: XM_039081552   ⟹   XP_038937480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,269,666 - 110,443,666 (+)NCBI
mRatBN7.28101,391,177 - 101,564,684 (+)NCBI
RefSeq Acc Id: XM_039081553   ⟹   XP_038937481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,057,981 - 110,388,667 (+)NCBI
mRatBN7.28101,179,067 - 101,509,677 (+)NCBI
RefSeq Acc Id: XM_039081554   ⟹   XP_038937482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,057,981 - 110,365,479 (+)NCBI
mRatBN7.28101,179,067 - 101,487,746 (+)NCBI
RefSeq Acc Id: XM_063265596   ⟹   XP_063121666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,240,057 - 110,443,666 (+)NCBI
RefSeq Acc Id: XM_063265597   ⟹   XP_063121667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,244,685 - 110,443,666 (+)NCBI
RefSeq Acc Id: NP_001101649   ⟸   NM_001108179
- UniProtKB: D4A3Q2 (UniProtKB/TrEMBL),   A6I2F7 (UniProtKB/TrEMBL),   A0A8I6G238 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243693   ⟸   XM_006243631
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9G6 (UniProtKB/TrEMBL),   A0A8I6ADB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243694   ⟸   XM_006243632
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9G6 (UniProtKB/TrEMBL),   A0A8I6ADB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764750   ⟸   XM_008766528
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9G6 (UniProtKB/TrEMBL),   A0A8I6ADB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074990   ⟸   ENSRNOT00000079618
RefSeq Acc Id: ENSRNOP00000061907   ⟸   ENSRNOT00000066917
RefSeq Acc Id: XP_038937481   ⟸   XM_039081553
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038937482   ⟸   XM_039081554
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038937480   ⟸   XM_039081552
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038937479   ⟸   XM_039081551
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000096619   ⟸   ENSRNOT00000109411
RefSeq Acc Id: ENSRNOP00000076659   ⟸   ENSRNOT00000100986
RefSeq Acc Id: ENSRNOP00000090312   ⟸   ENSRNOT00000115852
RefSeq Acc Id: ENSRNOP00000078635   ⟸   ENSRNOT00000111891
RefSeq Acc Id: XP_063121666   ⟸   XM_063265596
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121667   ⟸   XM_063265597
- Peptide Label: isoform X3
Protein Domains
SCD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K9G6-F1-model_v2 AlphaFold A0A0G2K9G6 1-1258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696218
Promoter ID:EPDNEW_R6743
Type:multiple initiation site
Name:Stag1_1
Description:stromal antigen 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08108,958,137 - 108,958,197EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310744 AgrOrtholog
BioCyc Gene G2FUF-29369 BioCyc
Ensembl Genes ENSRNOG00000015389 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066917 ENTREZGENE
  ENSRNOT00000066917.2 UniProtKB/TrEMBL
  ENSRNOT00000079618.2 UniProtKB/TrEMBL
  ENSRNOT00000100986.1 UniProtKB/TrEMBL
  ENSRNOT00000109411.1 UniProtKB/TrEMBL
  ENSRNOT00000111891.1 UniProtKB/TrEMBL
  ENSRNOT00000115852.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Cohesin_Scc3/SA UniProtKB/TrEMBL
  SCD UniProtKB/TrEMBL
  STAG UniProtKB/TrEMBL
KEGG Report rno:315958 UniProtKB/TrEMBL
NCBI Gene 315958 ENTREZGENE
PANTHER COHESIN SUBUNIT SA-1 UniProtKB/TrEMBL
  PTHR11199 UniProtKB/TrEMBL
Pfam SCD UniProtKB/TrEMBL
  STAG UniProtKB/TrEMBL
PhenoGen Stag1 PhenoGen
PROSITE SCD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015389 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2K9G6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y920_RAT UniProtKB/TrEMBL
  A0A8I6ADB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AQI4_RAT UniProtKB/TrEMBL
  A0A8I6G238 ENTREZGENE, UniProtKB/TrEMBL
  A6I2F7 ENTREZGENE, UniProtKB/TrEMBL
  D4A3Q2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-05 Stag1  STAG1 cohesin complex component  Stag1  stromal antigen 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Stag1  stromal antigen 1   Stag1_predicted  stromal antigen 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Stag1_predicted  stromal antigen 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED