Hsd17b8 (hydroxysteroid 17-beta dehydrogenase 8) - Rat Genome Database

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Gene: Hsd17b8 (hydroxysteroid 17-beta dehydrogenase 8) Ictidomys tridecemlineatus
Analyze
Symbol: Hsd17b8
Name: hydroxysteroid 17-beta dehydrogenase 8
RGD ID: 12675541
Description: ENCODES a protein that exhibits (3R)-hydroxyacyl-CoA dehydrogenase (NAD+) activity (inferred); estradiol 17-beta-dehydrogenase [NAD(P)] activity (inferred); NADH binding (inferred); INVOLVED IN androgen metabolic process (ortholog); estrogen metabolic process (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN membrane (inferred); mitochondrial envelope (inferred); mitochondrial matrix (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: estradiol 17-beta-dehydrogenase 8; hydroxysteroid 17-beta dehydrogenase 8, transcript variant X1; hydroxysteroid 17-beta dehydrogenase 8, transcript variant X2; hydroxysteroid 17-beta dehydrogenase 8, transcript variant X3; hydroxysteroid 17-beta dehydrogenase 8, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,309,422 - 38,311,663 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,648,604 - 25,650,757 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,648,604 - 25,650,757 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Hsd17b8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,309,422 - 38,311,663 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,648,604 - 25,650,757 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,648,604 - 25,650,757 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSD17B8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,204,655 - 33,206,831 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,204,655 - 33,206,831 (+)EnsemblGRCh38hg38GRCh38
GRCh37633,172,432 - 33,174,608 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,280,397 - 33,282,585 (+)NCBINCBI36Build 36hg18NCBI36
Build 34633,280,396 - 33,282,585NCBI
Celera634,726,785 - 34,728,973 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,914,459 - 32,916,653 (+)NCBIHuRef
CHM1_1633,174,288 - 33,176,486 (+)NCBICHM1_1
T2T-CHM13v2.0633,026,008 - 33,028,184 (+)NCBIT2T-CHM13v2.0
Hsd17b8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,245,007 - 34,247,029 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,245,007 - 34,247,034 (-)EnsemblGRCm39 Ensembl
GRCm381734,026,033 - 34,028,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,026,033 - 34,028,060 (-)EnsemblGRCm38mm10GRCm38
MGSCv371734,162,978 - 34,165,000 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,636,489 - 33,638,511 (-)NCBIMGSCv36mm8
Celera1736,772,162 - 36,774,185 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Hsd17b8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,828,571 - 4,830,635 (+)NCBIGRCr8
mRatBN7.2204,826,725 - 4,828,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,822,026 - 4,828,742 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,578,527 - 5,580,523 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,940,281 - 4,942,277 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,421,165 - 5,423,160 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,817,212 - 3,819,316 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,817,179 - 3,819,235 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,896,543 - 5,898,654 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,964,860 - 4,966,855 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1204,965,086 - 4,967,082 (+)NCBI
Celera206,426,931 - 6,428,926 (+)NCBICelera
Cytogenetic Map20p12NCBI
Hsd17b8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,778,276 - 1,780,397 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,778,276 - 1,780,397 (+)NCBIChiLan1.0ChiLan1.0
HSD17B8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,682,351 - 47,684,652 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,554,020 - 43,556,322 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,776,837 - 32,779,042 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,891,753 - 33,893,950 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,891,753 - 33,893,950 (+)Ensemblpanpan1.1panPan2
HSD17B8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,667,674 - 2,669,918 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,663,515 - 2,669,917 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,748,819 - 2,751,058 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0122,998,414 - 3,000,653 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl122,998,475 - 3,000,551 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,666,602 - 2,668,840 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,747,969 - 2,750,208 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,822,541 - 2,824,780 (+)NCBIUU_Cfam_GSD_1.0
HSD17B8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl725,247,608 - 25,249,785 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1725,247,577 - 25,249,786 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2729,753,837 - 29,756,042 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSD17B8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,868,307 - 38,870,564 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,868,685 - 38,870,459 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604433,038,755 - 33,041,527 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hsd17b8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,600,706 - 23,602,751 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,600,706 - 23,602,786 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000026687   ⟹   ENSSTOP00000015262
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647625,648,604 - 25,650,757 (-)Ensembl
RefSeq Acc Id: XM_005318827   ⟹   XP_005318884
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494638,309,423 - 38,311,663 (+)NCBI
SpeTri2.0NW_00493647625,648,611 - 25,650,757 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013366580   ⟹   XP_013222034
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494638,309,422 - 38,311,663 (+)NCBI
SpeTri2.0NW_00493647625,648,604 - 25,650,754 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021722029   ⟹   XP_021577704
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494638,309,422 - 38,311,284 (+)NCBI
SpeTri2.0NW_00493647625,649,235 - 25,650,754 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005318884   ⟸   XM_005318827
- Peptide Label: isoform X2
- UniProtKB: I3MT17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013222034   ⟸   XM_013366580
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021577704   ⟸   XM_021722029
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSTOP00000015262   ⟸   ENSSTOT00000026687


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020853 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026687.2 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
NCBI Gene Hsd17b8 ENTREZGENE
PANTHER (3R)-3-HYDROXYACYL-COA DEHYDROGENASE UniProtKB/TrEMBL
  SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER UniProtKB/TrEMBL
Pfam adh_short_C2 UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
SMART PKS_KR UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt I3MT17 ENTREZGENE, UniProtKB/TrEMBL