Scg2 (secretogranin II) - Rat Genome Database

Name: Scg2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Scg2 (secretogranin II) Ictidomys tridecemlineatus

Analyze

Symbol:

Scg2

Name:

secretogranin II

RGD ID:

12662979

Description:

ENCODES a protein that exhibits chemoattractant activity (inferred); cytokine activity (inferred); INVOLVED IN angiogenesis (inferred); eosinophil chemotaxis (inferred); induction of positive chemotaxis (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN neuronal dense core vesicle (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

secretogranin II, transcript variant X1; secretogranin II, transcript variant X2; secretogranin-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCG2 (secretogranin II)	NCBI	Ortholog
Mus musculus (house mouse):	Scg2 (secretogranin II)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Scg2 (secretogranin II)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Scg2 (secretogranin II)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCG2 (secretogranin II)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SCG2 (secretogranin II)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SCG2 (secretogranin II)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SCG2 (secretogranin II)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scg2 (secretogranin II)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	179,024,421 - 179,029,787 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	5,367,206 - 5,373,017 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	5,367,270 - 5,372,627 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (IEA)

eosinophil chemotaxis (IEA)

induction of positive chemotaxis (IEA)

intracellular signal transduction (IEA)

MAPK cascade (IEA)

negative regulation of endothelial cell apoptotic process (IEA)

negative regulation of extrinsic apoptotic signaling pathway (IEA)

positive chemotaxis (IEA)

positive regulation of endothelial cell proliferation (IEA)

Cellular Component

dense core granule (IEA)

extracellular region (IEA)

extracellular space (IEA)

neuronal dense core vesicle (IEA,ISO)

secretory granule (IEA)

Molecular Function

chemoattractant activity (IEA)

cytokine activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Scg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	179,024,421 - 179,029,787 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	5,367,206 - 5,373,017 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	5,367,270 - 5,372,627 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCG2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	223,596,940 - 223,602,361 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	223,596,940 - 223,602,361 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	224,461,658 - 224,467,079 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	224,169,902 - 224,175,365 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	224,287,231 - 224,292,584	NCBI
Celera	2	218,227,485 - 218,232,948 (-)	NCBI		Celera
Cytogenetic Map	2	q36.1	NCBI
HuRef	2	216,313,475 - 216,319,034 (-)	NCBI		HuRef
CHM1_1	2	224,468,089 - 224,473,648 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	224,080,034 - 224,085,455 (-)	NCBI		T2T-CHM13v2.0

Scg2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	79,412,083 - 79,417,743 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	79,412,386 - 79,417,837 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	79,434,366 - 79,440,026 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	79,434,669 - 79,440,120 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	79,431,244 - 79,436,665 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	79,313,693 - 79,319,114 (-)	NCBI		MGSCv36	mm8
MGSCv36	1	80,309,596 - 80,315,017 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	1	C4	NCBI
cM Map	1	40.89	NCBI

Scg2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	88,251,531 - 88,257,208 (-)	NCBI		GRCr8
mRatBN7.2	9	80,803,074 - 80,808,646 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	80,803,075 - 80,821,097 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	89,232,915 - 89,238,224 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	94,361,806 - 94,367,115 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	92,744,332 - 92,749,641 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	85,237,460 - 85,243,024 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	85,237,458 - 85,243,001 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	84,991,667 - 84,997,231 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	78,762,661 - 78,767,970 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	78,946,079 - 78,951,389 (-)	NCBI
Celera	9	78,291,442 - 78,296,748 (-)	NCBI		Celera
Cytogenetic Map	9	q34	NCBI

Scg2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	10,364,607 - 10,366,466 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	10,361,440 - 10,366,956 (+)	NCBI	ChiLan1.0	ChiLan1.0

SCG2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	126,223,219 - 126,228,655 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	126,238,188 - 126,243,628 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	110,849,262 - 110,854,770 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	229,427,169 - 229,432,731 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	229,424,536 - 229,429,510 (-)	Ensembl	panpan1.1		panPan2

SCG2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	29,435,038 - 29,440,615 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	29,435,041 - 29,437,333 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	30,270,420 - 30,275,988 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	29,459,286 - 29,464,858 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	29,459,232 - 29,464,827 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	29,370,476 - 29,376,041 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	29,304,406 - 29,309,978 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	29,314,146 - 29,319,716 (-)	NCBI		UU_Cfam_GSD_1.0

SCG2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	125,419,847 - 125,426,278 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	125,420,773 - 125,426,303 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SCG2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	109,505,344 - 109,510,830 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	89,869,948 - 89,875,489 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scg2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	1,659,431 - 1,661,290 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	1,656,195 - 1,661,779 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013360854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021729996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000025256 ⟹ ENSSTOP00000020100

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936569	5,367,206 - 5,373,017 (-)	Ensembl

RefSeq Acc Id:

XM_013360854 ⟹ XP_013216308

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	179,024,421 - 179,029,787 (-)	NCBI
SpeTri2.0	NW_004936569	5,367,270 - 5,372,626 (-)	NCBI

Sequence:

show sequence

GGGTTTGTGGCTGAGCCGGTGACGTCAGTGTGCAGTGCGGAGTCAGGCGCGGCGGCTCCCTATA
AGCCCAGGAGCTGTCCGGGTGCTGAAACGGCCCGAGGAGCTCAGCCTGCGGACCAGGAGGAACA
TGCTGTGGACCTTCCCTGCCCTGTAAGACAGAGGAAATCTTTAAAATATGGCAGAAGCTAAGAC
CCACCAGCTTGGAGCAGCCCTGTCTCTCATCCATTTAATTTTCTTCATCTCTGGAGTTGAGGCA
GCTTCATTCCAGAGAAACCAACTGCTTCAGAAAGAACCAGACCCAAGATTGGAAAATGCCCAAA
AGTTTCCCAGTCCCGAGATGATCCGGGCTTTGGAGTACATAGAAAAGCTCCGGCAGCAAGCTCA
CAGAGAAGAAAGCAGCCCAGACTATAATCCCTACCAAGGTGTCTCTGTTCCCCTTCAGCCAAAA
GAAAACGGCGAGGAAAGCCACCTGCTGGAGAGCTCAAGGGATTCGCTGAGCGAAGACGAGTGGA
TGAAGATAATCCTTGAAGCGCTGAGGCAGGCAGAAAGGGAGCCTCAGTCTGCACTGAAAGAAAA
CAAGCCCTATGCCATGAATTCGGAAAAGAACTTCCCTGGGGATGTGACGGATGATTATGAAACT
CAGCAGTGGCCAGAGAGGAAGCTCAAGCACATGCGATTCCCTCTGATGTACGAAGAGAATTCCA
GGGACAACCCCTTCAAACGCACCAATGAAATAGTAGAGGAACAGTACACACCGCAAAGTCTTGC
TACCCTGGAGTCTGTCTTCCAAGAGCTGGGCAAACTGACGGGACCAAGCAGCCAGAAAAGGGAG
AGGGCCGACGAGGAGCAAAAGCTGTACACAGATGACGAGGATGACCTCTACAAGGCCAGTAACA
TCGCCTATGAAGATGTGGTCGGGGGAGAAGACTGGAACCCGGTGGAGGAGAAAATAGAGACTCA
CACCCAGGAAGAGGCGAGGGACAGCAAAGAGAATATGGAAAAGAATGAACACATCAACGAAGAA
ATGAAGCGTTCGGGGCAGCAGGGGCTCCAGGATGAAGATCTCCAGAAAGAGAATAAGGTCCAGC
TCTCAGACGACGTTGCCAAAGTGATCGCCTATTTGAAAAGGAATTTACAGATCCCCCCTGAAGA
CCTGATCGACATGCTCAAAACCGGGGAGAAGCCAAGTGGGTCCGTGGAGCCCGAGCAGGACCTT
GACCTTCCTGCTGACTTAGACGACGTCTCAGAGGCTGACTTAGACCATCCGGACCTGTTCCCAA
ATAAGATGCTCTCCAAGAGTGGGTACCCCAAGACACCTGGTCATGCCGTGACAGAGGCCTTACC
AGATGGACTCAGCGTTGAGGACATTCTAAATCTTTTAGGGATGGAGAGTGCCACCAATCAAAAG
CCTCCATATTTTCCCAATCCGTATAACCGAGAGAAGGTTCTGCTGAGGCTCCCCTACGGCCCTG
GAAGATCTAGAGCAAACCAGCTCCCCAAAGCTGCCTGGATGCCTGACGTTGAAAACAGACAAGT
GGCGTTGGAAAACCCGAATGACAAGGACCAAGAGTTGGGAGAGTACTTGGCCCGGATGCTGGTG
AAGTACCCTGAGATCATGAATTCAAACCAGGTGAAGCGAGTGACCAGTCCAGGCTCATCTGAAG
ATGACCTCCAGGAAGAAGAGCAACTGGAGCAGGCGATCAAGGAGCATCTGAGCCAAGGCAACTC
CCAGGAGACTGAGAAACCGTCCCCGGTGAGCAAGAGATTCCCGGTGGGGTCCCCGAAGAACGAC
GACACCCCGAACAGACAGTACTTGGATGAAGACCTGCTAATGAAAGTTCTGGAGTACCTCAACC
AAGAAAAGGCAGAAAAGGGGAGGGAGCACGTTGCCAAGCGAGCCATGGAAAATATGTAGGCGGC
ATTCCTCAACTGCCCCATTTTCACTCCTCTCACCCCAAGCGAACCCCAGCATTTCTCTTTAGTG
TGTTGACTTCTATCCTGTTAACACTGTAATATCTTTAAATGATGTACAGGCAGATGATTCCAGG
TCCCTGGGGAGTCTGCTTCACTCGCTCTGAGTTGTTCTCTTGTGTATGGATTCTGTGTAAATGT
TATGACTCTGGATTAAAAAAAAATTATTATGTCCTTTATTCAAGAAAGATATCTATGATAGTGT
TGAACAGTGTATCTAATGGCTGTGGCATTGTTGATGCTCACATACGATAAAGAGTGTCCTATAA
TTCTCTTGAAAATTTTTAATATTTATTGAATTATTTTGTTACTGTCTGTAGTGTTTTGTGGAGT
ACTGGAGCAAAAACAATAAAGCATTATAAATATA

hide sequence

RefSeq Acc Id:

XM_021729996 ⟹ XP_021585671

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	179,024,421 - 179,029,787 (-)	NCBI
SpeTri2.0	NW_004936569	5,367,270 - 5,372,627 (-)	NCBI

Sequence:

show sequence

GGGGTTTGTGGCTGAGCCGGTGACGTCAGTGTGCAGTGCGGAGTCAGGCGCGGCGGCTCCCTAT
AAGCCCAGGAGCTGTCCGGGTGCTGAAACGGCCCGAGGAGCTCAGCCTGCGGACCAGGAGGAAC
ATGCTGTGGACCTTCCCTGCCCTGTAAGACAGAGGAAATCTTTAAAATATGGCAGAAGCTAAGA
CCCACCAGCTTGGAGCAGCCCTGTCTCTCATCCATTTAATTTTCTTCATCTCTGGAGTTGAGGC
AGCTTCATTCCAGAGAAACCAACTGCTTCAGAAAGAACCAGACCCAAGATTGGAAAATGCCCAA
AAGTTTCCCAGTCCCGAGATGATCCGGGCTTTGGAGTACATAGAAAAGCTCCGGCAGCAAGCTC
ACAGAGAAGAAAGCAGCCCAGACTATAATCCCTACCAAGGTGTCTCTGTTCCCCTTCAGCCAAA
AGAAAACGGCGAGGAAAGCCACCTGCTGGAGAGCTCAAGGGATTCGCTGAGCGAAGACGAGTGG
ATGAAGATAATCCTTGAAGCGCTGAGGCAGGCAGAAAGGGAGCCTCAGTCTGCACTGAAAGAAA
ACAAGCCCTATGCCATGAATTCGGAAAAGAACTTCCCTGGGGATGTGACGGATGATTATGAAAC
TCAGCAGTGGCCAGAGAGGAAGCTCAAGCACATGCGATTCCCTCTGATGTACGAAGAGAATTCC
AGGGACAACCCCTTCAAACGCACCAATGAAATAGTAGAGGAACAGTACACACCGCAAAGTCTTG
CTACCCTGGAGTCTGTCTTCCAAGAGCTGGGCAAACTGACGGGACCAAGCAGCCAGAAAAGGGA
GAGGGCCGACGAGGAGCAAAAGCTGTACACAGATGACGAGGATGACCTCTACAAGGCCAGTAAC
ATCGCCTATGAAGATGTGGTCGGGGGAGAAGACTGGAACCCGGTGGAGGAGAAAATAGAGACTC
ACACCCAGGAAGAGGCGAGGGACAGCAAAGAGAATATGGAAAAGAATGAACACATCAACGAAGA
AATGAAGCGTTCGGGGCAGCAGGGGCTCCAGGATGAAGATCTCCAGAAAGAGAATAAGGTCCAG
CTCTCAGACGACGTTGCCAAAGTGATCGCCTATTTGAAAAGGTTAGTGAGTGCCGCCGGGGGTG
GGAGGTCGCAGAATGGGCAAAATGGGGAAAGAGCAGCCAAGCTCTTTGAGAAACCCCTTGATTC
TCAGTCCATTTATCAGTTGATTGAAATCTCCAGGAATTTACAGATCCCCCCTGAAGACCTGATC
GACATGCTCAAAACCGGGGAGAAGCCAAGTGGGTCCGTGGAGCCCGAGCAGGACCTTGACCTTC
CTGCTGACTTAGACGACGTCTCAGAGGCTGACTTAGACCATCCGGACCTGTTCCCAAATAAGAT
GCTCTCCAAGAGTGGGTACCCCAAGACACCTGGTCATGCCGTGACAGAGGCCTTACCAGATGGA
CTCAGCGTTGAGGACATTCTAAATCTTTTAGGGATGGAGAGTGCCACCAATCAAAAGCCTCCAT
ATTTTCCCAATCCGTATAACCGAGAGAAGGTTCTGCTGAGGCTCCCCTACGGCCCTGGAAGATC
TAGAGCAAACCAGCTCCCCAAAGCTGCCTGGATGCCTGACGTTGAAAACAGACAAGTGGCGTTG
GAAAACCCGAATGACAAGGACCAAGAGTTGGGAGAGTACTTGGCCCGGATGCTGGTGAAGTACC
CTGAGATCATGAATTCAAACCAGGTGAAGCGAGTGACCAGTCCAGGCTCATCTGAAGATGACCT
CCAGGAAGAAGAGCAACTGGAGCAGGCGATCAAGGAGCATCTGAGCCAAGGCAACTCCCAGGAG
ACTGAGAAACCGTCCCCGGTGAGCAAGAGATTCCCGGTGGGGTCCCCGAAGAACGACGACACCC
CGAACAGACAGTACTTGGATGAAGACCTGCTAATGAAAGTTCTGGAGTACCTCAACCAAGAAAA
GGCAGAAAAGGGGAGGGAGCACGTTGCCAAGCGAGCCATGGAAAATATGTAGGCGGCATTCCTC
AACTGCCCCATTTTCACTCCTCTCACCCCAAGCGAACCCCAGCATTTCTCTTTAGTGTGTTGAC
TTCTATCCTGTTAACACTGTAATATCTTTAAATGATGTACAGGCAGATGATTCCAGGTCCCTGG
GGAGTCTGCTTCACTCGCTCTGAGTTGTTCTCTTGTGTATGGATTCTGTGTAAATGTTATGACT
CTGGATTAAAAAAAAATTATTATGTCCTTTATTCAAGAAAGATATCTATGATAGTGTTGAACAG
TGTATCTAATGGCTGTGGCATTGTTGATGCTCACATACGATAAAGAGTGTCCTATAATTCTCTT
GAAAATTTTTAATATTTATTGAATTATTTTGTTACTGTCTGTAGTGTTTTGTGGAGTACTGGAG
CAAAAACAATAAAGCATTATAAATATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013216308	(Get FASTA)	NCBI Sequence Viewer
	XP_021585671	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000020100.2
GenBank Protein	KAG3275385	(Get FASTA)	NCBI Sequence Viewer
	KAG3275386	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013216308 ⟸ XM_013360854
- Peptide Label:	isoform X2
- UniProtKB:	I3N6V4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEAKTHQLGAALSLIHLIFFISGVEAASFQRNQLLQKEPDPRLENAQKFPSPEMIRALEYIEK LRQQAHREESSPDYNPYQGVSVPLQPKENGEESHLLESSRDSLSEDEWMKIILEALRQAEREPQ SALKENKPYAMNSEKNFPGDVTDDYETQQWPERKLKHMRFPLMYEENSRDNPFKRTNEIVEEQY TPQSLATLESVFQELGKLTGPSSQKRERADEEQKLYTDDEDDLYKASNIAYEDVVGGEDWNPVE EKIETHTQEEARDSKENMEKNEHINEEMKRSGQQGLQDEDLQKENKVQLSDDVAKVIAYLKRNL QIPPEDLIDMLKTGEKPSGSVEPEQDLDLPADLDDVSEADLDHPDLFPNKMLSKSGYPKTPGHA VTEALPDGLSVEDILNLLGMESATNQKPPYFPNPYNREKVLLRLPYGPGRSRANQLPKAAWMPD VENRQVALENPNDKDQELGEYLARMLVKYPEIMNSNQVKRVTSPGSSEDDLQEEEQLEQAIKEH LSQGNSQETEKPSPVSKRFPVGSPKNDDTPNRQYLDEDLLMKVLEYLNQEKAEKGREHVAKRAM ENM hide sequence

RefSeq Acc Id:

XP_021585671 ⟸ XM_021729996

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAEAKTHQLGAALSLIHLIFFISGVEAASFQRNQLLQKEPDPRLENAQKFPSPEMIRALEYIEK
LRQQAHREESSPDYNPYQGVSVPLQPKENGEESHLLESSRDSLSEDEWMKIILEALRQAEREPQ
SALKENKPYAMNSEKNFPGDVTDDYETQQWPERKLKHMRFPLMYEENSRDNPFKRTNEIVEEQY
TPQSLATLESVFQELGKLTGPSSQKRERADEEQKLYTDDEDDLYKASNIAYEDVVGGEDWNPVE
EKIETHTQEEARDSKENMEKNEHINEEMKRSGQQGLQDEDLQKENKVQLSDDVAKVIAYLKRLV
SAAGGGRSQNGQNGERAAKLFEKPLDSQSIYQLIEISRNLQIPPEDLIDMLKTGEKPSGSVEPE
QDLDLPADLDDVSEADLDHPDLFPNKMLSKSGYPKTPGHAVTEALPDGLSVEDILNLLGMESAT
NQKPPYFPNPYNREKVLLRLPYGPGRSRANQLPKAAWMPDVENRQVALENPNDKDQELGEYLAR
MLVKYPEIMNSNQVKRVTSPGSSEDDLQEEEQLEQAIKEHLSQGNSQETEKPSPVSKRFPVGSP
KNDDTPNRQYLDEDLLMKVLEYLNQEKAEKGREHVAKRAMENM

hide sequence

RefSeq Acc Id:

ENSSTOP00000020100 ⟸ ENSSTOT00000025256

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000025412	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000025256.2	UniProtKB/TrEMBL
InterPro	Granin	UniProtKB/TrEMBL
	ScgII	UniProtKB/TrEMBL
NCBI Gene	Scg2	ENTREZGENE
PANTHER	PTHR15119	UniProtKB/TrEMBL
	SECRETOGRANIN-2	UniProtKB/TrEMBL
Pfam	Granin	UniProtKB/TrEMBL
UniProt	I3N6V4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar