Cxcr4 (C-X-C motif chemokine receptor 4) - Rat Genome Database

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Gene: Cxcr4 (C-X-C motif chemokine receptor 4) Ictidomys tridecemlineatus
Analyze
Symbol: Cxcr4
Name: C-X-C motif chemokine receptor 4
RGD ID: 12656642
Description: ENCODES a protein that exhibits small molecule binding (ortholog); INVOLVED IN aorta development (ortholog); blood vessel endothelial cell migration (ortholog); brain development (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; hypoxia inducible factor pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Bone Metastasis (ortholog); Breast Neoplasms (ortholog); FOUND IN cell-cell junction (ortholog); endosome (ortholog); growth cone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-X-C chemokine receptor type 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303101,819,271 - 101,823,136 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646939,794,584 - 39,798,459 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646939,794,613 - 39,798,448 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acute myeloid leukemia  (ISO)
Bone Metastasis  (ISO)
Breast Neoplasms  (ISO)
Cancer Pain  (ISO)
cardiomyopathy  (ISO)
Cerebral Hemorrhage  (ISO)
Chronic Periodontitis  (ISO)
clear cell renal cell carcinoma  (ISO)
colorectal cancer  (ISO)
colorectal carcinoma  (ISO)
congestive heart failure  (ISO)
COVID-19  (ISO)
esophagus squamous cell carcinoma  (ISO)
extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue  (ISO)
Femoral Fractures  (ISO)
Gastro-Enteropancreatic Neuroendocrine Tumor  (ISO)
Gastrointestinal Neoplasms  (ISO)
genetic disease  (ISO)
hemangioblastoma  (ISO)
hepatocellular carcinoma  (ISO)
Hermansky-Pudlak syndrome  (ISO)
Hyperalgesia  (ISO)
juvenile rheumatoid arthritis  (ISO)
Kidney Reperfusion Injury  (ISO)
laryngeal carcinoma  (ISO)
larynx cancer  (ISO)
leukopenia  (ISO)
Liver Metastasis  (ISO)
lung adenocarcinoma  (ISO)
lung metastasis  (ISO)
lung non-small cell carcinoma  (ISO)
Lymphatic Metastasis  (ISO)
lymphoplasmacytic lymphoma  (ISO)
mucoepidermoid carcinoma  (ISO)
nasopharynx carcinoma  (ISO)
Neoplasm Invasiveness  (ISO)
Neoplasm Metastasis  (ISO)
Neoplastic Cell Transformation  (ISO)
nephrosclerosis  (ISO)
Neuralgia  (ISO)
obesity  (ISO)
osteoporosis  (ISO)
osteosarcoma  (ISO)
pancreatic adenocarcinoma  (ISO)
paroxysmal nocturnal hemoglobinuria  (ISO)
primary immunodeficiency disease  (ISO)
prostate cancer  (ISO)
pulmonary hypertension  (ISO)
rectum cancer  (ISO)
rheumatoid arthritis  (ISO)
Right Ventricular Hypertrophy  (ISO)
Spinal Cord Reperfusion Injury  (ISO)
stomach cancer  (ISO)
T-cell acute lymphoblastic leukemia  (ISO)
temporal lobe epilepsy  (ISO)
ulcerative colitis  (ISO)
Vascular Remodeling  (ISO)
WHIM syndrome 1  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aorta development  (ISO)
blood vessel endothelial cell migration  (ISO)
brain development  (IEA,ISO)
branching involved in blood vessel morphogenesis  (ISO)
calcium-mediated signaling  (IEA,ISO)
cardiac muscle contraction  (ISO)
cell chemotaxis  (IEA)
cell migration  (ISO)
cellular response to cytokine stimulus  (IEA,ISO)
cellular response to organonitrogen compound  (ISO)
cellular response to xenobiotic stimulus  (ISO)
chemokine-mediated signaling pathway  (IEA)
chemotaxis  (IEA)
CXCL12-activated CXCR4 signaling pathway  (IEA,ISO)
detection of mechanical stimulus involved in sensory perception of pain  (ISO)
detection of temperature stimulus involved in sensory perception of pain  (ISO)
endothelial cell differentiation  (ISO)
endothelial tube morphogenesis  (ISO)
epithelial cell development  (ISO)
G protein-coupled receptor signaling pathway  (IEA)
generation of neurons  (ISO)
germ cell development  (ISO)
germ cell migration  (ISO)
hematopoietic stem cell migration  (ISO)
immune response  (IEA)
kidney development  (ISO)
motor neuron axon guidance  (ISO)
myelin maintenance  (ISO)
neural precursor cell proliferation  (ISO)
neurogenesis  (IEA,ISO)
neuron migration  (ISO)
neuron recognition  (ISO)
osteoclast differentiation  (ISO)
positive regulation of calcium ion import  (ISO)
positive regulation of cell migration  (IEA,ISO)
positive regulation of chemotaxis  (ISO)
positive regulation of cold-induced thermogenesis  (ISO)
positive regulation of cytosolic calcium ion concentration  (IEA)
positive regulation of dendrite extension  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of macrophage migration inhibitory factor signaling pathway  (IEA)
positive regulation of mesenchymal stem cell migration  (ISO)
positive regulation of neurogenesis  (ISO)
positive regulation of oligodendrocyte differentiation  (ISO)
positive regulation of protein phosphorylation  (ISO)
positive regulation of vascular wound healing  (ISO)
positive regulation of vasculature development  (IEA)
regulation of calcium ion transport  (ISO)
regulation of cell adhesion  (IEA)
regulation of cell migration  (ISO)
regulation of chemotaxis  (IEA,ISO)
regulation of neuron migration  (ISO)
regulation of programmed cell death  (ISO)
regulation of viral process  (ISO)
response to activity  (ISO)
response to hypoxia  (IEA)
response to organic cyclic compound  (ISO)
response to tacrolimus  (ISO)
response to ultrasound  (ISO)
T cell proliferation  (ISO)
telencephalon cell migration  (ISO)
ventricular septum development  (ISO)

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cxcr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303101,819,271 - 101,823,136 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646939,794,584 - 39,798,459 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646939,794,613 - 39,798,448 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382136,114,349 - 136,118,149 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2136,114,349 - 136,119,177 (-)EnsemblGRCh38hg38GRCh38
GRCh372136,871,919 - 136,875,719 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,588,389 - 136,592,195 (-)NCBINCBI36Build 36hg18NCBI36
Build 342136,705,651 - 136,709,457NCBI
Celera2130,582,637 - 130,586,442 (-)NCBICelera
Cytogenetic Map2q22.1NCBI
HuRef2128,864,423 - 128,868,228 (-)NCBIHuRef
CHM1_12136,877,321 - 136,881,126 (-)NCBICHM1_1
T2T-CHM13v2.02136,558,831 - 136,562,630 (-)NCBIT2T-CHM13v2.0
Cxcr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391128,515,936 - 128,520,036 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1128,515,936 - 128,520,030 (-)EnsemblGRCm39 Ensembl
GRCm381128,588,199 - 128,592,299 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1128,588,199 - 128,592,293 (-)EnsemblGRCm38mm10GRCm38
MGSCv371130,484,776 - 130,488,876 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361130,415,745 - 130,419,822 (-)NCBIMGSCv36mm8
Celera1131,222,729 - 131,226,820 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.43NCBI
Cxcr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81342,630,383 - 42,634,288 (-)NCBIGRCr8
mRatBN7.21340,077,976 - 40,081,883 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1340,077,976 - 40,081,883 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1342,673,402 - 42,677,295 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01343,961,532 - 43,965,425 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01341,206,597 - 41,210,496 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01345,314,952 - 45,318,856 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1345,314,933 - 45,318,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01350,394,128 - 50,398,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41341,308,286 - 41,312,190 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11341,322,328 - 41,326,213 (-)NCBI
Celera1340,447,190 - 40,451,093 (-)NCBICelera
Cytogenetic Map13q13NCBI
Cxcr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554403,455,153 - 3,460,109 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554403,456,165 - 3,460,024 (-)NCBIChiLan1.0ChiLan1.0
CXCR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21338,813,034 - 38,816,868 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B38,828,003 - 38,831,837 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B23,744,271 - 23,748,106 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B140,185,803 - 140,189,626 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B140,181,829 - 140,189,647 (-)Ensemblpanpan1.1panPan2
CXCR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11938,874,650 - 38,877,740 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1938,874,145 - 38,877,740 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1939,115,923 - 39,119,630 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01940,316,370 - 40,320,084 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1940,316,772 - 40,320,037 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11938,959,603 - 38,963,312 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01939,119,612 - 39,123,328 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01940,352,845 - 40,356,556 (-)NCBIUU_Cfam_GSD_1.0
CXCR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1515,663,494 - 15,667,232 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11515,663,652 - 15,666,706 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21518,125,415 - 18,128,469 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXCR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11020,336,470 - 20,340,308 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1020,336,247 - 20,340,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660612,116,532 - 2,120,394 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxcr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473235,472,760 - 35,477,528 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473235,473,740 - 35,477,482 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005315834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000006315   ⟹   ENSSTOP00000005647
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493646939,794,584 - 39,798,459 (+)Ensembl
RefSeq Acc Id: XM_005315834   ⟹   XP_005315891
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303101,819,271 - 101,823,136 (-)NCBI
SpeTri2.0NW_00493646939,794,613 - 39,798,448 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005315891 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005647.2
GenBank Protein KAG3274408 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005315891   ⟸   XM_005315834
- UniProtKB: I3M7N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000005647   ⟸   ENSSTOT00000006315

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006334 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006315.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Chemokine_CXCR4_N_dom UniProtKB/TrEMBL
  Chemokine_rcpt UniProtKB/TrEMBL
  CXCR4/ACKR2 UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
NCBI Gene Cxcr4 ENTREZGENE
PANTHER C-X-C CHEMOKINE RECEPTOR TYPE 4 UniProtKB/TrEMBL
  CELL ADHESION MOLECULE UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
  CXCR4_N UniProtKB/TrEMBL
PRINTS CCCHEMOKINER UniProtKB/TrEMBL
  CXCCHMKINER4 UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt I3M7N9 ENTREZGENE, UniProtKB/TrEMBL