Ptgfrn (prostaglandin F2 receptor inhibitor) - Rat Genome Database

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Gene: Ptgfrn (prostaglandin F2 receptor inhibitor) Ictidomys tridecemlineatus
Analyze
Symbol: Ptgfrn
Name: prostaglandin F2 receptor inhibitor
RGD ID: 12644382
Description: INVOLVED IN lipid droplet organization (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: prostaglandin F2 receptor negative regulator
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505812,378,681 - 12,453,362 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366272,069,336 - 2,110,336 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366272,069,066 - 2,108,526 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Ptgfrn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505812,378,681 - 12,453,362 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366272,069,336 - 2,110,336 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366272,069,066 - 2,108,526 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGFRN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381116,909,916 - 116,990,353 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1116,909,916 - 116,990,353 (+)EnsemblGRCh38hg38GRCh38
GRCh371117,452,538 - 117,532,975 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,254,212 - 117,334,495 (+)NCBINCBI36Build 36hg18NCBI36
Build 341117,164,730 - 117,245,014NCBI
Celera1115,712,896 - 115,761,542 (+)NCBICelera
Cytogenetic Map1p13.1NCBI
HuRef1115,311,314 - 115,391,612 (+)NCBIHuRef
CHM1_11117,567,600 - 117,647,875 (+)NCBICHM1_1
T2T-CHM13v2.01116,920,364 - 117,000,790 (+)NCBIT2T-CHM13v2.0
Ptgfrn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393100,947,546 - 101,018,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3100,947,548 - 101,017,594 (-)EnsemblGRCm39 Ensembl
GRCm383101,040,230 - 101,110,745 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3101,040,232 - 101,110,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv373100,844,159 - 100,914,089 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363101,169,297 - 101,239,227 (-)NCBIMGSCv36mm8
Celera3103,248,506 - 103,317,952 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map343.93NCBI
Ptgfrn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82191,158,166 - 191,233,432 (-)NCBIGRCr8
mRatBN7.22188,469,521 - 188,544,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2188,469,521 - 188,544,795 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2196,107,003 - 196,178,612 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02193,959,387 - 194,030,951 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02188,785,962 - 188,857,737 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02203,423,143 - 203,494,391 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2203,423,143 - 203,494,391 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02222,873,519 - 222,915,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42196,091,505 - 196,162,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12196,054,258 - 196,125,704 (-)NCBI
Celera2180,913,173 - 180,954,194 (-)NCBICelera
Cytogenetic Map2q34NCBI
Ptgfrn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543520,046,712 - 20,092,051 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543520,046,712 - 20,092,051 (+)NCBIChiLan1.0ChiLan1.0
PTGFRN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21109,563,264 - 109,643,584 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11109,162,738 - 109,243,014 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0185,530,198 - 85,610,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11120,524,859 - 120,608,105 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1120,524,859 - 120,608,105 (-)Ensemblpanpan1.1panPan2
PTGFRN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11754,337,778 - 54,378,363 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1754,296,361 - 54,379,662 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1753,943,975 - 54,024,252 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01755,178,335 - 55,258,707 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1755,178,341 - 55,260,006 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11754,215,129 - 54,295,138 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01754,251,583 - 54,331,817 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01754,827,228 - 54,907,257 (+)NCBIUU_Cfam_GSD_1.0
PTGFRN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4103,745,181 - 103,793,138 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14103,747,007 - 103,835,192 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24113,711,852 - 113,799,380 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTGFRN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12016,737,335 - 16,815,439 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2016,736,833 - 16,815,651 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603819,410,979 - 19,489,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptgfrn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477212,603,700 - 12,685,840 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477212,603,098 - 12,689,071 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000010917   ⟹   ENSSTOP00000009792
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366272,069,336 - 2,110,336 (+)Ensembl
RefSeq Acc Id: XM_040289088   ⟹   XP_040145022
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505812,378,681 - 12,453,362 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040145022 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009792.3
GenBank Protein KAG3281201 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040145022   ⟸   XM_040289088
- UniProtKB: I3MGC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000009792   ⟸   ENSSTOT00000010917
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010916 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010917.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene Ptgfrn ENTREZGENE
PANTHER PROSTAGLANDIN F2 RECEPTOR NEGATIVE REGULATOR UniProtKB/TrEMBL
  V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt I3MGC7 ENTREZGENE, UniProtKB/TrEMBL