Mcmdc2 (minichromosome maintenance domain containing 2) - Rat Genome Database

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Gene: Mcmdc2 (minichromosome maintenance domain containing 2) Ictidomys tridecemlineatus
Analyze
Symbol: Mcmdc2
Name: minichromosome maintenance domain containing 2
RGD ID: 12634596
Description: ENCODES a protein that exhibits ATP binding (inferred); DNA binding (inferred); single-stranded DNA helicase activity (inferred); INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); late meiotic recombination nodule assembly (ortholog); meiotic recombination nodule assembly (ortholog); ASSOCIATED WITH azoospermia (ortholog); Joubert syndrome 21 (ortholog); spermatogenic failure 57 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MCM domain-containing protein 2; minichromosome maintenance domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530367,602,488 - 67,607,766 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364967,149,501 - 7,182,771 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Mcmdc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530367,602,488 - 67,607,766 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364967,149,501 - 7,182,771 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCMDC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38866,870,771 - 66,926,382 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl866,870,749 - 66,922,048 (+)EnsemblGRCh38hg38GRCh38
GRCh37867,783,006 - 67,834,283 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36867,948,884 - 67,976,570 (+)NCBINCBI36Build 36hg18NCBI36
Celera863,776,478 - 63,827,777 (+)NCBICelera
Cytogenetic Map8q13.1NCBI
HuRef863,275,571 - 63,326,869 (+)NCBIHuRef
CHM1_1867,837,961 - 67,889,304 (+)NCBICHM1_1
T2T-CHM13v2.0867,297,252 - 67,352,914 (+)NCBIT2T-CHM13v2.0
Mcmdc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3919,978,863 - 10,011,179 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl19,978,863 - 10,012,310 (+)EnsemblGRCm39 Ensembl
GRCm3819,906,157 - 9,943,606 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl19,908,638 - 9,942,085 (+)EnsemblGRCm38mm10GRCm38
MGSCv3719,898,719 - 9,931,035 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3619,896,933 - 9,926,168 (+)NCBIMGSCv36mm8
Celera19,881,469 - 9,914,977 (+)NCBICelera
Cytogenetic Map1A2NCBI
cM Map12.19NCBI
Mcmdc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8514,071,609 - 14,120,435 (-)NCBIGRCr8
mRatBN7.259,291,967 - 9,337,526 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl59,298,101 - 9,338,300 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx511,454,559 - 11,494,044 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0513,084,457 - 13,123,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0512,789,227 - 12,828,713 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.058,973,861 - 9,039,616 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl58,978,010 - 9,038,594 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0513,781,014 - 13,839,762 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.458,842,432 - 8,881,827 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera58,810,709 - 8,849,895 (-)NCBICelera
Cytogenetic Map5q11NCBI
Mcmdc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544412,348,543 - 12,382,769 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544412,348,537 - 12,382,769 (-)NCBIChiLan1.0ChiLan1.0
MCMDC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2782,606,924 - 82,685,993 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1858,249,270 - 58,328,279 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0863,412,462 - 63,465,258 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1865,079,264 - 65,128,147 (+)NCBIpanpan1.1PanPan1.1panPan2
MCMDC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12916,424,088 - 16,462,094 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2916,426,318 - 16,460,599 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2916,739,713 - 16,777,699 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02916,504,173 - 16,542,352 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2916,503,756 - 16,540,857 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12916,536,436 - 16,574,575 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02916,636,010 - 16,674,434 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02916,892,562 - 16,930,779 (+)NCBIUU_Cfam_GSD_1.0
MCMDC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl467,847,817 - 67,895,867 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1467,850,585 - 67,892,438 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2473,908,711 - 73,952,722 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MCMDC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1862,742,176 - 62,790,994 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl862,745,855 - 62,790,143 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603978,709,912 - 78,763,056 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcmdc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474424,425,515 - 24,471,470 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474424,422,656 - 24,483,365 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040294004   ⟹   XP_040149938
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530367,602,488 - 67,603,336 (+)NCBI
RefSeq Acc Id: XR_005737864
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530367,602,488 - 67,607,766 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040149938 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022418.1
Reference Protein Sequences
RefSeq Acc Id: XP_040149938   ⟸   XM_040294004


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020702 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019500.2 UniProtKB/TrEMBL
InterPro MCM UniProtKB/TrEMBL
NCBI Gene Mcmdc2 ENTREZGENE
PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER UniProtKB/TrEMBL
  MINICHROMOSOME MAINTENANCE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
UniProt I3NDH1_ICTTR UniProtKB/TrEMBL