Ccdc14 (coiled-coil domain containing 14) - Rat Genome Database

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Gene: Ccdc14 (coiled-coil domain containing 14) Ictidomys tridecemlineatus
Analyze
Symbol: Ccdc14
Name: coiled-coil domain containing 14
RGD ID: 12620601
Description: INVOLVED IN substantia nigra development (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Familial Thoracic Aortic Aneurysm 7 (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602127,365,499 - 127,426,632 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367251,273,946 - 1,331,109 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367251,273,984 - 1,331,096 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ccdc14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602127,365,499 - 127,426,632 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367251,273,946 - 1,331,109 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367251,273,984 - 1,331,096 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383123,885,176 - 123,961,229 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3123,897,305 - 123,961,408 (-)EnsemblGRCh38hg38GRCh38
GRCh373123,632,269 - 123,680,076 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363125,115,257 - 125,158,620 (-)NCBINCBI36Build 36hg18NCBI36
Build 343125,115,257 - 125,158,620NCBI
Celera3122,039,702 - 122,087,793 (-)NCBICelera
Cytogenetic Map3q21.1NCBI
HuRef3121,005,827 - 121,054,097 (-)NCBIHuRef
CHM1_13123,595,278 - 123,643,264 (-)NCBICHM1_1
T2T-CHM13v2.03126,611,315 - 126,687,354 (-)NCBIT2T-CHM13v2.0
Ccdc14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391634,510,940 - 34,545,574 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1634,510,986 - 34,545,572 (+)EnsemblGRCm39 Ensembl
GRCm381634,690,557 - 34,725,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1634,690,616 - 34,725,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv371634,690,702 - 34,725,280 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361634,610,457 - 34,631,163 (+)NCBIMGSCv36mm8
Celera1635,157,616 - 35,192,194 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1624.46NCBI
Ccdc14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81179,557,267 - 79,593,128 (-)NCBIGRCr8
mRatBN7.21166,052,063 - 66,087,915 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1166,052,620 - 66,087,956 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01169,281,000 - 69,316,897 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,281,554 - 69,316,848 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,371,494 - 72,407,318 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,872,420 - 67,905,568 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1165,506,401 - 65,542,295 (-)NCBICelera
Cytogenetic Map11q22NCBI
Ccdc14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542723,042,648 - 23,095,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542723,043,001 - 23,095,201 (-)NCBIChiLan1.0ChiLan1.0
CCDC14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22121,875,431 - 121,923,161 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13121,880,207 - 121,927,911 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03121,018,879 - 121,066,563 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13127,918,294 - 127,965,906 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3127,918,294 - 127,965,906 (-)Ensemblpanpan1.1panPan2
CCDC14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13326,958,752 - 27,009,159 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3326,959,430 - 27,009,436 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3326,980,339 - 27,031,888 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03327,192,107 - 27,243,694 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3327,191,567 - 27,243,799 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13326,988,028 - 27,039,513 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03327,032,247 - 27,083,826 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03327,644,852 - 27,701,025 (-)NCBIUU_Cfam_GSD_1.0
CCDC14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13136,438,967 - 136,486,496 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113136,439,015 - 136,502,604 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213145,971,225 - 146,005,171 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12256,889,424 - 56,939,915 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041109,404,098 - 109,459,149 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249122,269,829 - 2,317,154 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249122,270,467 - 2,316,998 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005338881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000004207   ⟹   ENSSTOP00000003779
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367251,273,946 - 1,331,109 (+)Ensembl
RefSeq Acc Id: XM_005338881   ⟹   XP_005338938
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602127,365,499 - 127,426,632 (+)NCBI
SpeTri2.0NW_0049367251,273,984 - 1,331,096 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338938 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003779.3
GenBank Protein KAG3271317 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005338938   ⟸   XM_005338881
- UniProtKB: I3M3T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000003779   ⟸   ENSSTOT00000004207


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004201 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004207.3 UniProtKB/TrEMBL
InterPro CCDC14 UniProtKB/TrEMBL
NCBI Gene Ccdc14 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 14 UniProtKB/TrEMBL
  PTHR22367 UniProtKB/TrEMBL
Pfam CCDC14 UniProtKB/TrEMBL
UniProt I3M3T5 ENTREZGENE, UniProtKB/TrEMBL