Tprg1 (tumor protein p63 regulated 1)

Gene: Tprg1 (tumor protein p63 regulated 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Tprg1

Name:

tumor protein p63 regulated 1

RGD ID:

12594806

Description:

ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	114,880,350 - 115,010,250 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936578	972,010 - 1,102,077 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936578	972,057 - 1,102,039 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Tprg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	114,880,350 - 115,010,250 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936578	972,010 - 1,102,077 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936578	972,057 - 1,102,039 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TPRG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	188,997,227 - 189,325,304 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	188,947,214 - 189,325,304 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	188,889,760 - 189,043,093 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	190,372,457 - 190,523,964 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	187,324,428 - 187,475,904 (+)	NCBI		Celera
Cytogenetic Map	3	q28	NCBI
HuRef	3	186,294,129 - 186,445,298 (+)	NCBI		HuRef
CHM1_1	3	188,852,675 - 189,004,217 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	191,813,855 - 192,142,070 (+)	NCBI		T2T-CHM13v2.0

Tprg1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	25,105,567 - 25,242,338 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	25,105,567 - 25,241,094 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	25,286,817 - 25,423,588 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	25,286,817 - 25,422,344 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	25,286,903 - 25,422,430 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	25,202,166 - 25,337,693 (+)	NCBI		MGSCv36	mm8
Celera	16	25,836,034 - 25,972,211 (+)	NCBI		Celera
Cytogenetic Map	16	B1	NCBI
cM Map	16	17.0	NCBI

Tprg1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	88,827,231 - 88,954,668 (-)	NCBI		GRCr8
mRatBN7.2	11	75,322,470 - 75,449,907 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	75,322,470 - 75,449,907 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	84,125,440 - 84,252,943 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	76,760,496 - 76,888,006 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	75,823,410 - 75,950,974 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	78,733,046 - 78,861,745 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	78,728,128 - 78,861,716 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	81,863,279 - 81,991,056 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	77,477,085 - 77,601,486 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	77,534,720 - 77,656,016 (-)	NCBI
Celera	11	74,224,150 - 74,351,014 (-)	NCBI		Celera
Cytogenetic Map	11	q22-q23	NCBI

Tprg1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	18,632,523 - 18,767,636 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	18,632,583 - 18,853,032 (-)	NCBI	ChiLan1.0	ChiLan1.0

TPRG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	186,817,441 - 187,200,890 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	187,046,526 - 187,199,885 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	186,124,644 - 186,350,751 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	194,753,299 - 194,904,389 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	194,753,299 - 194,904,389 (+)	Ensembl	panpan1.1		panPan2

TPRG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	21,391,903 - 21,528,932 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	21,419,564 - 21,528,718 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	25,486,114 - 25,623,044 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	21,325,186 - 21,462,593 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	21,325,019 - 21,462,593 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	21,341,672 - 21,478,439 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	21,336,224 - 21,472,946 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	21,577,180 - 21,714,080 (+)	NCBI		UU_Cfam_GSD_1.0

TPRG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	126,724,573 - 126,861,438 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	126,529,961 - 126,860,676 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	135,718,773 - 136,052,723 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TPRG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	83,408,942 - 83,566,246 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	83,455,741 - 83,566,220 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	57,002,079 - 57,150,830 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tprg1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	67,725,466 - 67,841,980 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	67,719,765 - 67,871,369 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005330980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000013049 ⟹ ENSSTOP00000011693

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936578	972,010 - 1,102,077 (-)	Ensembl

RefSeq Acc Id:

XM_005330980 ⟹ XP_005331037

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	114,880,350 - 115,010,250 (-)	NCBI
SpeTri2.0	NW_004936578	972,057 - 1,102,039 (-)	NCBI

Sequence:

show sequence

TTCAGCCAACTTGGTACGTGAGTTTCCGATCAGATTGGATTGTTAGCACTGGGGACTCTCCTGT
TTGGCTTCATCTGAACCAGCCATACCTCCAGTGGCCACTATATTTGTGGTCTACCTGCTTTTGT
CCAGGTAAAGAAAGAAGAGCCTTGAGGACTGGCCACAGCCTAGCCAGGCTGAAGAATGTCAACA
ATTGGGAGTTTTGAAGGATTCCAGCCAGTGTCTCTGAAGCAAGAGGGAGATGACCAGCCCTCTG
AAACTGATCACCTGTCCATGGAGGAGGGAGATCAAGATAAGACCCCTGTGCGGAGGGAAATCTC
AAGACAGTCAAGTGTAACTAAATCAACACTTTGCCCCAATCCTTATCACCAGCCTTATATCTCA
CGGAAGTACTTCGTTACAAGGCCAGGGGCCATTGAGACTGCCCTGGAGGACTTGAAAGGCCACA
TAGCTGAGACTTATGGAGAGACCATTCAAGGCTTCTGGCTCCTGACAGAGATAGACCACTGGAA
CAACGAGAAGGAGAAGATTCTGCTGGTCACAGACAAGACACTCTTGATCTGCAAATATGACTTC
ATCATGCTCAGCTGTGTGCAGGTGCAGCGGGTTCCCCTGAGTGCTGTGTATCGTATCTGCCTGG
GCAAGTTTATCTTCCCTGCCATTTCACTGGACAAGAGACCTGGAGAGGGTCTTAGGATCTACTG
GGGGAGTCCAGAGGAGCAGTCCCTGTTGTCTCGCTGGAACCCATGGTCCACTGAAGTTCCTTAT
GCTACGTTCACTGAACACCCTATGAAATACACCAGTGAGAAGTTCCTCGAAATTTGCAAGTTGT
CTGAGTTCACGTCGAAGCTTGTTTCAGCTATCCAGAATGCCCGTAAGAATTCTGCTGGATCTGG
AAGAGAAAAAGAACTGATGGTGTTAACCCAACCCATTTTGATTGAGACCTACACAGGGCTGATG
TCATTTATTGGAAATCGCAACAAACTTGGCTATTCTCTTGCCCGTGGGAGTGTTGGTTTTTGAG
ACTCTTTTTGATACATTATCCATAGATATGCCATTATTGAAGATTTTGCTTCAGTCCACTGTAT
TTTTGGACAGAAAAAGTATTTTTAGATAGTACTATATGACTTTGAATATTTAATATTTTAGAAA
AACTGAAAGCTTGATTGACTGGATAGATACACATTTCAGGTGTATCGATTTTACTAAATTTTAT
TAAAATTGGAAAATAAATATTGCTGAACTCAAGTAATGTTATCAAATAAGTGCCTGATCATAAA
CTCTGAGCAGACTCTGGTTTCTTTTTTCTCCTGCTTATTATATGTAGGCATTTGCCAGGTTCTG
ATCTTCACCCTTCTGATCCATATGTATTCCCTATTAGTTCTCCTTAGCTCTATTATTGTAGCTA
TCACTTTTATGAAGATGACTTCCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005331037	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011693.3
GenBank Protein	KAG3271101	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005331037 ⟸ XM_005330980

- UniProtKB:

I3MKA0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTIGSFEGFQPVSLKQEGDDQPSETDHLSMEEGDQDKTPVRREISRQSSVTKSTLCPNPYHQP
YISRKYFVTRPGAIETALEDLKGHIAETYGETIQGFWLLTEIDHWNNEKEKILLVTDKTLLICK
YDFIMLSCVQVQRVPLSAVYRICLGKFIFPAISLDKRPGEGLRIYWGSPEEQSLLSRWNPWSTE
VPYATFTEHPMKYTSEKFLEICKLSEFTSKLVSAIQNARKNSAGSGREKELMVLTQPILIETYT
GLMSFIGNRNKLGYSLARGSVGF

hide sequence

RefSeq Acc Id:

ENSSTOP00000011693 ⟸ ENSSTOT00000013049

Protein Domains

hSac2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013052	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013049.3	UniProtKB/TrEMBL
InterPro	hSac2	UniProtKB/TrEMBL
	Inositol_phosphatase	UniProtKB/TrEMBL
	TPRG1-like	UniProtKB/TrEMBL
NCBI Gene	Tprg1	ENTREZGENE
PANTHER	PTHR31108	UniProtKB/TrEMBL
	TUMOR PROTEIN P63-REGULATED GENE 1 PROTEIN	UniProtKB/TrEMBL
Pfam	hSac2	UniProtKB/TrEMBL
PROSITE	HSAC2	UniProtKB/TrEMBL
UniProt	I3MKA0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar