Pop5 (POP5 homolog, ribonuclease P/MRP subunit)

Gene: Pop5 (POP5 homolog, ribonuclease P/MRP subunit) Ictidomys tridecemlineatus

Analyze

Symbol:

Pop5

Name:

POP5 homolog, ribonuclease P/MRP subunit

RGD ID:

12587178

Description:

ENCODES a protein that exhibits ribonuclease P activity (ortholog); INVOLVED IN tRNA processing (ortholog); PARTICIPATES IN tRNA maturation pathway; FOUND IN endoribonuclease complex (inferred); multimeric ribonuclease P complex (inferred); nucleolar ribonuclease P complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

processing of precursor 5, ribonuclease P/MRP subunit; ribonuclease P/MRP protein subunit POP5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	145,886,996 - 145,889,799 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936668	385,679 - 389,135 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936668	385,945 - 388,688 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

rRNA processing (IEA)

tRNA 5'-leader removal (IEA)

tRNA processing (IEA,ISO)

Cellular Component

endoribonuclease complex (IEA)

multimeric ribonuclease P complex (IEA)

nucleolar ribonuclease P complex (IEA)

nucleolus (IEA)

nucleus (IEA)

ribonuclease MRP complex (IEA)

ribonuclease P complex (IEA)

ribonucleoprotein complex (IEA)

Molecular Function

protein binding (ISO)

ribonuclease P activity (IEA,ISO)

ribonuclease P RNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

tRNA maturation pathway (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Pop5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	145,886,996 - 145,889,799 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936668	385,679 - 389,135 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936668	385,945 - 388,688 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POP5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	120,578,764 - 120,581,402 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	120,578,764 - 120,581,402 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	121,016,567 - 121,019,205 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	119,501,231 - 119,503,584 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	120,651,139 - 120,653,492 (-)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	118,026,265 - 118,028,618 (-)	NCBI		HuRef
CHM1_1	12	120,985,617 - 120,987,970 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	120,567,897 - 120,570,535 (-)	NCBI		T2T-CHM13v2.0

Pop5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	115,373,505 - 115,379,031 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	115,373,895 - 115,383,410 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	115,235,588 - 115,240,972 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	115,235,836 - 115,245,351 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	115,685,860 - 115,690,981 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	115,496,847 - 115,501,971 (+)	NCBI		MGSCv36	mm8
Celera	5	112,335,061 - 112,340,187 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	56.01	NCBI

Pop5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	47,037,451 - 47,045,778 (-)	NCBI		GRCr8
mRatBN7.2	12	41,376,755 - 41,384,882 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	41,376,755 - 41,381,336 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	42,544,008 - 42,548,590 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	43,157,673 - 43,162,255 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	42,218,230 - 42,222,812 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	47,138,346 - 47,143,152 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	47,138,346 - 47,142,852 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	48,932,035 - 48,939,948 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	42,644,912 - 42,649,407 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	42,508,549 - 42,510,469 (-)	NCBI
Celera	12	42,996,403 - 43,001,050 (-)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

Pop5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	11,069,131 - 11,071,814 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	11,069,131 - 11,071,814 (+)	NCBI	ChiLan1.0	ChiLan1.0

POP5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	128,649,227 - 128,651,664 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	128,645,602 - 128,648,775 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	118,162,497 - 118,165,472 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	121,535,005 - 121,537,350 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	121,535,005 - 121,537,350 (-)	Ensembl	panpan1.1		panPan2

POP5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	16,463,006 - 16,465,359 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	16,462,994 - 16,465,221 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	16,466,218 - 16,468,556 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	16,729,628 - 16,731,967 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	16,727,535 - 16,731,868 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	16,690,291 - 16,692,628 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	16,765,960 - 16,768,298 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	16,808,032 - 16,810,366 (-)	NCBI		UU_Cfam_GSD_1.0

POP5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	40,522,719 - 40,525,866 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	40,523,014 - 40,525,934 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	42,990,859 - 42,993,369 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POP5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	115,932,265 - 115,934,644 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	115,932,394 - 115,934,562 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	129,162,351 - 129,164,754 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pop5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	13,088,947 - 13,092,001 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	13,088,928 - 13,092,691 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005336802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005336803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000012575 ⟹ ENSSTOP00000011270

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936668	385,679 - 389,135 (+)	Ensembl

RefSeq Acc Id:

XM_005336802 ⟹ XP_005336859

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	145,886,997 - 145,889,799 (+)	NCBI
SpeTri2.0	NW_004936668	385,945 - 388,688 (+)	NCBI

Sequence:

show sequence

CCATTGGCCACGGGCGGGACCGACATCCGGTGTGTACGTCGTGCCTGCTGGGGTGAGGCCGCCA
TGGTGCGCTTCAAGCACAGGTACCTGCTCTGCGAATTGGTGTCTGACGACCCTCGCTGTCGCCT
GAGTCTGGAGGACCGAGTGCTGGGCGGTCTTTTTCGGGACACGATTGCCCGCGTACACGGGACT
TTCGGCGCAGCAGCCTGCTCTGTTGGTTTCGCGGTTCGATACATCAATGCTTATACTGGAATAG
TGCTACTTCGGTGTCGAAAAGAATTCTATCAGCTCGTGTGGTCAGCTCTTCCTTTCATTACGTA
CTTGGAGAACAAAGGACACCGTTATCCTTGTTTTTTCAACACCTTACATGTGGGAGGTACAATT
AGAACTTGTCAGAAGTTTCTGATTCGGTACAACAGGAGACAGCTGTTGATCCTGTTGCAGAACT
GCACTGATGAAGGAGAGCGGGAAGCCATCCAAAAGTCTGTCACAAGAAGCTGTTTATTAGAGGA
TTCTGGTGAGGAAGAGCTTTCAGACAGTGGTGGTGAAGAGGCTGCTGAAGCAATGGAGTGAACT
TCTGCTTGCCACACAGAAGGCTGTTCAGGCCTACTTGTGGAAACAGAACATTCTAGGAGGCACA
GCGTCTACATACAGTTCTCCAAACTGGAAGACTACCAACCAGAAGACAAGCTTGAAATGGAGGA
CTTAAATTACCTTTATGTAACATCCCTTGGATCCTGGTCTGCAGGTTGTAAAGGCTCTCTAGTT
ACATTTTTGTATCTAACTGCTTGGTTAAACAATGCTATAAATTATAAAAGGGCTTACAGAATTC
ATGTGTGGCCAAGTCTCCCCATCTACAACCTGACCTTGGTGAGAAGACTAACTCCCTCTGTGGT
ATTTATTTTAGCCTTCCACTTGAGGCTTTGTACTCTCAACCCCCAAATTGGATCTTAAGCAAAA
CATGTCACCTGAAGTAGAAATATTAAGACAGCAACTAAACTTTGTACAGACCTATAGCTAATCT
AATCTTGGCTTTATAAATACCAGATTCCTTCCCAATATTTAATCAGGTGACTTGATAAGAAATA
CAACTTTTGCACTTTGGCAAATGCCCTCATTATTTACATGGCCCTAGAGCATCTGCCAAATTCA
GTTTTCTACAGTTCCACTCTTTTCCTGTGGCCTTAAACGTAACACCATAAGAGACTGCCACACT
CACAGGAAGGAGTAAAAGTCTTGTGACCACATTTAGCCTACCACCTCCTAATGACATCTCTAGG
ATCTCTTTTCTCCATAATAAAAGGATACAGAAGTTT

hide sequence

RefSeq Acc Id:

XM_005336803 ⟹ XP_005336860

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	145,886,996 - 145,889,799 (+)	NCBI
SpeTri2.0	NW_004936668	385,945 - 388,688 (+)	NCBI

Sequence:

show sequence

CCATTGGCCACGGGCGGGACCGACATCCGGTGTGTACGTCGTGCCTGCTGGGGTGAGGCCGCCA
TGGTGCGCTTCAAGCACAGGTACCTGCTCTGCGAATTGGTGTCTGACGACCCTCGCTGTCGCCT
GAGTCTGGAGGACCGAGTGCTGGGCGGTCTTTTTCGGGACACGATTGCCCGCGTACACGGGACT
TTCGGCGCAGCAGCCTGCTCTGTTGGTTTCGCGGGTACAATTAGAACTTGTCAGAAGTTTCTGA
TTCGGTACAACAGGAGACAGCTGTTGATCCTGTTGCAGAACTGCACTGATGAAGGAGAGCGGGA
AGCCATCCAAAAGTCTGTCACAAGAAGCTGTTTATTAGAGGATTCTGGTGAGGAAGAGCTTTCA
GACAGTGGTGGTGAAGAGGCTGCTGAAGCAATGGAGTGAACTTCTGCTTGCCACACAGAAGGCT
GTTCAGGCCTACTTGTGGAAACAGAACATTCTAGGAGGCACAGCGTCTACATACAGTTCTCCAA
ACTGGAAGACTACCAACCAGAAGACAAGCTTGAAATGGAGGACTTAAATTACCTTTATGTAACA
TCCCTTGGATCCTGGTCTGCAGGTTGTAAAGGCTCTCTAGTTACATTTTTGTATCTAACTGCTT
GGTTAAACAATGCTATAAATTATAAAAGGGCTTACAGAATTCATGTGTGGCCAAGTCTCCCCAT
CTACAACCTGACCTTGGTGAGAAGACTAACTCCCTCTGTGGTATTTATTTTAGCCTTCCACTTG
AGGCTTTGTACTCTCAACCCCCAAATTGGATCTTAAGCAAAACATGTCACCTGAAGTAGAAATA
TTAAGACAGCAACTAAACTTTGTACAGACCTATAGCTAATCTAATCTTGGCTTTATAAATACCA
GATTCCTTCCCAATATTTAATCAGGTGACTTGATAAGAAATACAACTTTTGCACTTTGGCAAAT
GCCCTCATTATTTACATGGCCCTAGAGCATCTGCCAAATTCAGTTTTCTACAGTTCCACTCTTT
TCCTGTGGCCTTAAACGTAACACCATAAGAGACTGCCACACTCACAGGAAGGAGTAAAAGTCTT
GTGACCACATTTAGCCTACCACCTCCTAATGACATCTCTAGGATCTCTTTTCTCCATAATAAAA
GGATACAGAAGTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005336859	(Get FASTA)	NCBI Sequence Viewer
	XP_005336860	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011270.2
GenBank Protein	KAG3278897	(Get FASTA)	NCBI Sequence Viewer
	KAG3278898	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005336859 ⟸ XM_005336802
- Peptide Label:	isoform X1
- UniProtKB:	I3MJE8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVRFKHRYLLCELVSDDPRCRLSLEDRVLGGLFRDTIARVHGTFGAAACSVGFAVRYINAYTGI VLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFLIRYNRRQLLILLQN CTDEGEREAIQKSVTRSCLLEDSGEEELSDSGGEEAAEAME hide sequence

RefSeq Acc Id:	XP_005336860 ⟸ XM_005336803
- Peptide Label:	isoform X2
- Sequence:	show sequence MVRFKHRYLLCELVSDDPRCRLSLEDRVLGGLFRDTIARVHGTFGAAACSVGFAGTIRTCQKFL IRYNRRQLLILLQNCTDEGEREAIQKSVTRSCLLEDSGEEELSDSGGEEAAEAME hide sequence

RefSeq Acc Id:

ENSSTOP00000011270 ⟸ ENSSTOT00000012575

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012577	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012575.3	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.3250	UniProtKB/TrEMBL
InterPro	Pop5/Rpp14/Rnp2-like	UniProtKB/TrEMBL
	RNase_P/MRP_POP5	UniProtKB/TrEMBL
	Rnp2-like_sf	UniProtKB/TrEMBL
NCBI Gene	Pop5	ENTREZGENE
PANTHER	RIBONUCLEASE P_MRP PROTEIN SUBUNIT POP5	UniProtKB/TrEMBL
	RIBONUCLEASE P_MRP PROTEIN SUBUNIT POP5	UniProtKB/TrEMBL
Pfam	RNase_P_Rpp14	UniProtKB/TrEMBL
PIRSF	Ribonuclease_P_prd	UniProtKB/TrEMBL
Superfamily-SCOP	SSF160350	UniProtKB/TrEMBL
UniProt	I3MJE8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations