Ivd (isovaleryl-CoA dehydrogenase)

Gene: Ivd (isovaleryl-CoA dehydrogenase) Ictidomys tridecemlineatus

Analyze

Symbol:

Ivd

Name:

isovaleryl-CoA dehydrogenase

RGD ID:

12585636

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); isovaleryl-CoA dehydrogenase activity (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

isovaleryl-CoA dehydrogenase, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	86,023,008 - 86,036,677 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	3,871,148 - 3,885,241 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	3,871,152 - 3,883,521 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amino acid metabolic disorder (ISO)

Bloom syndrome (ISO)

colorectal cancer (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

isovaleric acidemia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

branched-chain amino acid catabolic process (ISO)

carboxylic acid catabolic process (IEA)

fatty acid beta-oxidation using acyl-CoA dehydrogenase (ISO)

L-leucine catabolic process (IEA)

Cellular Component

mitochondrial matrix (ISO)

mitochondrial membrane (ISO)

mitochondrion (IEA)

nucleoplasm (IEA)

Molecular Function

acyl-CoA dehydrogenase activity (IEA)

flavin adenine dinucleotide binding (IEA)

identical protein binding (ISO)

isovaleryl-CoA dehydrogenase activity (IEA,ISO)

oxidoreductase activity (IEA)

protein binding (ISO)

short-chain fatty acyl-CoA dehydrogenase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway (ISO)

3-hydroxyisobutyric aciduria pathway (ISO)

3-methylcrotonyl CoA carboxylase 1 deficiency pathway (ISO)

3-methylglutaconic aciduria type 1 pathway (ISO)

3-methylglutaconic aciduria type 3 pathway (ISO)

isobutyryl-CoA dehydrogenase deficiency pathway (ISO)

isovaleric acidemia pathway (ISO)

maple syrup urine disease pathway (ISO)

methylmalonate semialdehyde dehydrogenase deficiency pathway (ISO)

methylmalonic acidemia pathway (ISO)

propionic acidemia pathway (ISO)

valine, leucine and isoleucine degradation pathway (ISO)

valproic acid pharmacokinetics pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Ivd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	86,023,008 - 86,036,677 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	3,871,148 - 3,885,241 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	3,871,152 - 3,883,521 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IVD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	40,405,795 - 40,435,947 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	40,405,485 - 40,435,947 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	40,697,996 - 40,728,146 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	38,484,978 - 38,498,355 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	38,484,977 - 38,498,355	NCBI
Celera	15	17,463,670 - 17,479,493 (+)	NCBI		Celera
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	17,541,064 - 17,556,886 (+)	NCBI		HuRef
CHM1_1	15	40,817,565 - 40,833,386 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	38,212,996 - 38,243,333 (+)	NCBI		T2T-CHM13v2.0

Ivd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	118,692,475 - 118,713,388 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	118,692,435 - 118,713,390 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	118,861,959 - 118,882,909 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	118,861,954 - 118,882,909 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	118,687,736 - 118,707,093 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	118,553,441 - 118,572,798 (+)	NCBI		MGSCv36	mm8
Celera	2	120,013,107 - 120,032,696 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	59.64	NCBI

Ivd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	126,305,584 - 126,326,016 (+)	NCBI		GRCr8
mRatBN7.2	3	105,851,710 - 105,872,144 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	105,851,683 - 105,872,575 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	109,524,766 - 109,545,235 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,120,320 - 118,140,785 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	115,780,686 - 115,801,150 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	110,669,355 - 110,689,789 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	110,669,312 - 110,690,173 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	117,207,292 - 117,227,726 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	105,374,429 - 105,394,861 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	105,270,846 - 105,291,661 (+)	NCBI
Celera	3	104,765,745 - 104,785,979 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

Ivd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	7,327,557 - 7,346,027 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	7,327,557 - 7,341,533 (+)	NCBI	ChiLan1.0	ChiLan1.0

IVD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	29,642,102 - 29,672,428 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	33,793,458 - 33,823,800 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	19,342,283 - 19,372,465 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	37,596,455 - 37,626,708 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	37,596,688 - 37,609,902 (+)	Ensembl	panpan1.1		panPan2

IVD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	7,584,122 - 7,594,599 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	7,584,086 - 7,594,150 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	7,637,893 - 7,648,417 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	7,709,948 - 7,720,478 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	7,688,665 - 7,720,482 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	7,634,265 - 7,644,784 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	7,740,300 - 7,750,859 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	7,869,140 - 7,879,708 (+)	NCBI		UU_Cfam_GSD_1.0

IVD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	130,893,984 - 130,910,586 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	130,896,488 - 130,910,582 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	145,981,544 - 145,995,640 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IVD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	42,592,387 - 42,605,931 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	42,589,709 - 42,606,199 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	98,364,384 - 98,377,989 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013359771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000014521 ⟹ ENSSTOP00000013011

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936471	3,871,148 - 3,885,241 (+)	Ensembl

RefSeq Acc Id:

XM_013359771 ⟹ XP_013215225

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	86,023,017 - 86,036,677 (+)	NCBI
SpeTri2.0	NW_004936471	3,871,152 - 3,883,521 (+)	NCBI

Sequence:

show sequence

ATCATCTTCAAGCTATCTAAACTGAGGATCTTAAGAAAAAGTTGAAGATCATCTCTGAGGAAAC
AGTAACTAGTGAGGCTTCTAAGTTTCAATCTAATGCTATTTGGTGAGGTTACTTGTGGCTTGGC
TCTCAGAATGTGCTCTCAGTACTGGAGATGCTGCTTTCAATGCAATAATATTTTAGTTTCAGTT
GTATCTGTCCGCTTTCCTCCCTCTAGCTTCGACAGACCATGGCTAAGTTCCTTCAGGAGCATCT
GGCTCCCAAGGCCCAGGAAATTGATCATAGCAACGAGTTCAAGAACCTGCGAGAGTTTTGGAAA
CAGCTGGGGAGCCTGGGAGTATTGGGCATCACAGTCCCTGTTCAGTATGGTGGCTCTGGCTTGG
GCTACCTGGAACATGTGCTGGTGATGGAGGAGATATCCCGAGCTTCTGGAGCAGTGGGTCTCAG
CTATGGTGCCCACTCCAACCTGTGCATCAACCAGATTGTGCGCAATGGGAATGAGACCCAGAAG
GAGAAATACCTCCCCAAACTGATCAGCGGTGAGTACATTGGAGCCCTGGCCATGAGTGAGCCCA
ATGCTGGCTCTGATGTTGTCTCCATGAAGCTAAAGGCAGAAAAGAAAGGAGATTACTACATCCT
GAATGGCAACAAGTTCTGGATCACCAATGGCCCCGATGCTGATGTTCTCATTGTCTACGCCAAG
ACAGATCTAACTGCTGTGCCAGCCTCTCGGGGCATCACAGCCTTCATTGTGGAGAAGGGTATGC
CTGGCTTTAGCACCTCCAAGAAATTGGACAAGCTGGGCATGAGGGGTTCTAACACCTGTGAGCT
CATCTTTGAAGACTGTAAGGTTCCTGCTGCCAACATCCTGGGTCATGAGAGCAAGGGTGTCTAC
GTCCTGATGAGTGGGCTGGACCTGGAGCGCCTGGTGCTAGCCGGCGGGCCCCTGGGGCTCATGC
AGGCAGTCCTTGATCACACTATTCCCTACCTGCACGTAAGGGAAGCCTTTGGCCAGAAAATTGG
CCACTTCCAGTTGATGCAGGGGAAGATGGCAGACATGTATACCCGCCTCATGGCATGTCGGCAG
TATGTCTACAACGTTGCCAAGGCCTGTGATGAGGGCCATTGCACTGCCAAGGACTGTGCTGGTG
TGATTCTTTACGCAGCTGAGTGCGCCACACAGGTAGCCCTGGATGGCATTCAGTGTTTCGGTGG
CAATGGCTATATAAATGACTTTCCCATGGGCCGCTTTCTTCGAGATGCTAAGCTGTATGAGATC
GGGGCTGGGACCAGTGAGGTGAGACGGTTGGTCATTGGCAGAGCCTTCAACGCAGATTTCCACT
AGCCCCAAGATCCACCACCCCTTTCTCCCAGCACCTAGAGGCCTTTCTTTGGAAGCAGAGACAT
GGTAGCCTCCTGGCTGCCCGAAGCAGGCCCTGCTGCTCCACTTCCCTTCTGGCTACAGCCCTCA
AGCCTCTGCTGGATGGGAAGTCTTCTACACTGGCTGCCAAGCACTGTGGGCTAACCAGCCAGGA
AAAGCCTAACATGGAATCAGCAGGAAGCATATTATCTTTTCTGAGAGCTTTAGGAGGGCTTTGA
CTCTGTGCCCTTGCTCTCTGCTCTTCAACTTCAAAGCCTAATGCTCCCACCTCCTGAAGTGGCC
TGGAGATATGTAGGTACCCACCCCTTCTTTTAGGTGAGCTTGTGGCAGGGAGCCCTCTCTGTTC
AAGTACAGCAGAATCATTGCCCCCTTCATTTACTCAAACTTGTTGGTCTCTTTTCTGGGGAAAA
AGAAAAGCCAAAAATCCATCCTTGTTTGCTGGCTTCTTGAATCATCAGCTCCCAATCATTTGGG
AACACCTGTGCTACAGAGTCTGCCTGGGGAACAAAAGAGAATTGTGGAGAATTAGCTCTTGCTG
GCCCCTTTGGCAGCATCTCTGAGCTGTTCTGTGCTGCTCTGTCACAGAGACCAGTGAGATCTGG
TAAAGTAACCTTCCTCATCTACTGGGCAGCAGGTGCAGGACTTGCCTATCCAAGCAGGCCTGGG
TTGCCTGGCTCAACTCCAGCAGGGATTGCCTGTATACATTTCTTGAGACACCCTATGGCTAATT
TGGTTACAACTGCACAGTGGCTGCTGCCATTTTGTATTAAACATATTGTGAAACAAA

hide sequence

RefSeq Acc Id:

XM_040274738 ⟹ XP_040130672

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	86,023,008 - 86,036,677 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013215225	(Get FASTA)	NCBI Sequence Viewer
	XP_040130672	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000013011.2
GenBank Protein	KAG3261615	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013215225 ⟸ XM_013359771
- Peptide Label:	isoform X2
- UniProtKB:	I3MN34 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKFLQEHLAPKAQEIDHSNEFKNLREFWKQLGSLGVLGITVPVQYGGSGLGYLEHVLVMEEIS RASGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKA EKKGDYYILNGNKFWITNGPDADVLIVYAKTDLTAVPASRGITAFIVEKGMPGFSTSKKLDKLG MRGSNTCELIFEDCKVPAANILGHESKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHV REAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYAAECATQVA LDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADFH hide sequence

RefSeq Acc Id:	XP_040130672 ⟸ XM_040274738
- Peptide Label:	isoform X1
- UniProtKB:	I3MN34 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000013011 ⟸ ENSSTOT00000014521

Protein Domains

Acyl-CoA dehydrogenase/oxidase C-terminal Acyl-CoA dehydrogenase/oxidase N-terminal Acyl-CoA oxidase/dehydrogenase middle

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000014523	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000014521.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.540.10	UniProtKB/TrEMBL
	2.40.110.10	UniProtKB/TrEMBL
	Butyryl-CoA Dehydrogenase, subunit A, domain 3	UniProtKB/TrEMBL
InterPro	Acyl-CoA_DH_CS	UniProtKB/TrEMBL
	Acyl-CoA_Oxase/DH_cen-dom	UniProtKB/TrEMBL
	Acyl-CoA_Oxase/DH_mid-dom_sf	UniProtKB/TrEMBL
	AcylCo_DH-like_C	UniProtKB/TrEMBL
	AcylCo_DH/oxidase_C	UniProtKB/TrEMBL
	AcylCoA_DH/ox_N	UniProtKB/TrEMBL
	AcylCoA_DH/ox_N_sf	UniProtKB/TrEMBL
	AcylCoA_DH/oxidase_NM_dom	UniProtKB/TrEMBL
	IVD	UniProtKB/TrEMBL
NCBI Gene	Ivd	ENTREZGENE
PANTHER	ACYL-COA DEHYDROGENASE	UniProtKB/TrEMBL
	ISOVALERYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	UniProtKB/TrEMBL
Pfam	Acyl-CoA_dh_1	UniProtKB/TrEMBL
	Acyl-CoA_dh_M	UniProtKB/TrEMBL
	Acyl-CoA_dh_N	UniProtKB/TrEMBL
PROSITE	ACYL_COA_DH_1	UniProtKB/TrEMBL
	ACYL_COA_DH_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47203	UniProtKB/TrEMBL
	SSF56645	UniProtKB/TrEMBL
UniProt	I3MN34	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

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Imported Annotations - SMPDB