Prr29 (proline rich 29) - Rat Genome Database

Name: Prr29
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Prr29 (proline rich 29) Ictidomys tridecemlineatus

Analyze

Symbol:

Prr29

Name:

proline rich 29

RGD ID:

12584681

Description:

ASSOCIATED WITH hyperkalemic periodic paralysis (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

proline rich 29, transcript variant X1; proline rich 29, transcript variant X2; proline-rich protein 29

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRR29 (proline rich 29)	NCBI	Ortholog
Mus musculus (house mouse):	Prr29 (proline rich 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Prr29 (proline rich 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prr29 (proline rich 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRR29 (proline rich 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRR29 (proline rich 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRR29 (proline rich 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRR29 (proline rich 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prr29 (proline rich 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	14,597,733 - 14,602,631 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	4,592,066 - 4,594,272 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	4,592,066 - 4,594,272 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hyperkalemic periodic paralysis (ISO)

References

Genomics

Comparative Map Data

Prr29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	14,597,733 - 14,602,631 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	4,592,066 - 4,594,272 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	4,592,066 - 4,594,272 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRR29
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	63,998,351 - 64,004,305 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	63,998,351 - 64,004,305 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	62,075,711 - 62,081,665 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	59,429,449 - 59,435,396 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	56,463,786 - 56,469,714 (+)	NCBI		Celera
Cytogenetic Map	17	q23.3	NCBI
HuRef	17	57,443,369 - 57,449,297 (+)	NCBI		HuRef
CHM1_1	17	62,139,629 - 62,145,545 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	64,869,129 - 64,875,081 (+)	NCBI		T2T-CHM13v2.0

Prr29
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	106,255,838 - 106,267,940 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	106,256,298 - 106,268,384 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	106,374,762 - 106,377,114 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	106,365,472 - 106,377,558 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	106,236,140 - 106,238,428 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	106,181,562 - 106,193,204 (+)	NCBI		MGSCv36	mm8
Celera	11	118,106,165 - 118,108,453 (+)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	69.05	NCBI

Prr29
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	91,804,291 - 91,810,213 (+)	NCBI		GRCr8
mRatBN7.2	10	91,305,820 - 91,320,661 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	91,305,723 - 91,310,439 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	94,565,498 - 94,569,926 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	94,566,928 - 94,569,366 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	94,313,579 - 94,317,888 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	95,769,680 - 95,772,074 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	95,784,049 - 95,786,444 (+)	NCBI
Celera	10	89,977,835 - 89,982,263 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Prr29
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	7,847,903 - 7,854,667 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	7,851,993 - 7,857,147 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRR29
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	80,180,827 - 80,186,445 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	85,001,135 - 85,007,211 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	58,091,540 - 58,097,626 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	63,186,087 - 63,191,603 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	63,186,087 - 63,191,603 (+)	Ensembl	panpan1.1		panPan2

PRR29
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	11,900,474 - 11,902,961 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	11,899,680 - 11,902,774 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	9	13,561,457 - 13,563,939 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	12,508,255 - 12,510,736 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	15,021,541 - 15,024,021 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	15,023,693 - 15,026,177 (-)	NCBI		UU_Cfam_GSD_1.0

PRR29
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	14,991,419 - 14,995,568 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	14,992,316 - 14,995,393 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	14,984,201 - 14,988,539 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRR29
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	57,269,916 - 57,273,941 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	57,270,445 - 57,273,700 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	27,880,453 - 27,886,046 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prr29
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	1,489,820 - 1,496,968 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	1,489,003 - 1,493,102 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005328211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005328212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000033116 ⟹ ENSSTOP00000027728

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936541	4,592,066 - 4,594,253 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036681 ⟹ ENSSTOP00000027798

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936541	4,592,066 - 4,594,272 (+)	Ensembl

RefSeq Acc Id:

XM_005328211 ⟹ XP_005328268

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	14,597,733 - 14,602,631 (-)	NCBI
SpeTri2.0	NW_004936541	4,592,066 - 4,594,272 (+)	NCBI

Sequence:

show sequence

ATGGCTTCTGGGCCGGGCGGGAGCTGGGGGAGCGCCCCACCGCGGAGTGCAGACCCTACGCCCT
GGGTGACCATCCTGCAGTCCCTTCCGTCGGCCGTCCCACCCCCGCCCCCGCAGCCGGGCCGCGT
GAAGGAAGACTTGCTGGAGCTGATGATGCTGCAGAACGCGCAGATGCACCAGCTGCTGCTGAGC
CGCCTGGCGGCGGGGGCGGCGGGGGCGCTGAGCCCCAGGTCAGACTCGCCCAGCGCGCAGGTCT
ACCTAGAGGACCAACTGGAAGAACTGCAGGAGGAGATGGACACTCAGGAGGAAGAGCCTTTGGT
GTTCCACCACCACTACCTGCCCTGTTCACCACCACTACCTGCCCTGGGATCCCTGCCACTCTGG
CCAGCCCCTTTCCTCCCCCCGCCCCCACATCAGCCCCTCTTGCAGGATGCACCCAGGATTCAAC
ACTGGCCTCCTGCCTCCAGGAAAAGGGAGACGAGAGCTGTGCCACCGCCCCCACCCCCCAGTGC
CACAGGGACTGTGGGTGCAGATGTACCTCCTGCTTCAGACTACTATGATGCTGAGAGTATGCTG
TGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005328268	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000027728.1
	ENSSTOP00000027798.1
GenBank Protein	KAG3268650	(Get FASTA)	NCBI Sequence Viewer
	KAG3268651	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005328268 ⟸ XM_005328211
- UniProtKB:	A0A287D2L6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASGPGGSWGSAPPRSADPTPWVTILQSLPSAVPPPPPQPGRVKEDLLELMMLQNAQMHQLLLS RLAAGAAGALSPRSDSPSAQVYLEDQLEELQEEMDTQEEEPLVFHHHYLPCSPPLPALGSLPLW PAPFLPPPPHQPLLQDAPRIQHWPPASRKRETRAVPPPPPPSATGTVGADVPPASDYYDAESML hide sequence

RefSeq Acc Id:

ENSSTOP00000027798 ⟸ ENSSTOT00000036681

RefSeq Acc Id:

ENSSTOP00000027728 ⟸ ENSSTOT00000033116

Protein Domains

DUF4587

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000030600	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000033116.1	UniProtKB/TrEMBL
	ENSSTOT00000036681.1	UniProtKB/TrEMBL
InterPro	DUF4587	UniProtKB/TrEMBL
	PRR29-like	UniProtKB/TrEMBL
NCBI Gene	Prr29	ENTREZGENE
PANTHER	PROLINE-RICH PROTEIN 29	UniProtKB/TrEMBL
	PTHR28604	UniProtKB/TrEMBL
Pfam	DUF4587	UniProtKB/TrEMBL
UniProt	A0A287D2F0_ICTTR	UniProtKB/TrEMBL
	A0A287D2L6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar