Osbpl7 (oxysterol binding protein like 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Osbpl7 (oxysterol binding protein like 7) Ictidomys tridecemlineatus
Analyze
Symbol: Osbpl7
Name: oxysterol binding protein like 7
RGD ID: 12580450
Description: ENCODES a protein that exhibits cholesterol binding (inferred); lipid binding (inferred); INVOLVED IN cellular response to cholesterol (inferred); lipid transport (inferred); positive regulation of proteasomal protein catabolic process (inferred); ASSOCIATED WITH cholangiocarcinoma (ortholog); encephalopathy due to defective mitochondrial and peroxisomal fission 1 (ortholog); genetic disease (ortholog); FOUND IN autophagosome (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: oxysterol-binding protein-related protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,564,229 - 23,583,463 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649013,491,544 - 13,506,768 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649013,491,704 - 13,506,742 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Osbpl7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,564,229 - 23,583,463 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649013,491,544 - 13,506,768 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649013,491,704 - 13,506,742 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSBPL7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381747,807,372 - 47,821,794 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1747,807,372 - 47,821,803 (-)EnsemblGRCh38hg38GRCh38
GRCh371745,884,738 - 45,899,160 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,239,732 - 43,254,146 (-)NCBINCBI36Build 36hg18NCBI36
Build 341743,239,731 - 43,254,146NCBI
Celera1742,337,538 - 42,351,952 (-)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1741,253,652 - 41,268,065 (-)NCBIHuRef
CHM1_11745,949,693 - 45,964,103 (-)NCBICHM1_1
T2T-CHM13v2.01748,669,144 - 48,683,591 (-)NCBIT2T-CHM13v2.0
Osbpl7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,941,459 - 96,959,730 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,941,454 - 96,959,730 (+)EnsemblGRCm39 Ensembl
GRCm381197,050,633 - 97,068,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,050,628 - 97,068,904 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,912,134 - 96,930,218 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,866,716 - 96,884,994 (+)NCBIMGSCv36mm8
Celera11106,702,278 - 106,720,368 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.75NCBI
Osbpl7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,532,335 - 82,549,999 (+)NCBIGRCr8
mRatBN7.21082,035,995 - 82,053,566 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,036,042 - 82,053,557 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1086,983,948 - 87,001,614 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,481,998 - 86,499,664 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01081,874,581 - 81,892,251 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01084,986,330 - 85,003,947 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,986,328 - 85,004,562 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,776,868 - 84,794,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,771,941 - 85,789,490 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11085,787,018 - 85,803,123 (+)NCBI
Celera1080,797,350 - 80,814,860 (+)NCBICelera
Cytogenetic Map10q31NCBI
Osbpl7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,291,577 - 13,300,322 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,289,938 - 13,301,243 (+)NCBIChiLan1.0ChiLan1.0
OSBPL7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21917,281,312 - 17,295,806 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11719,246,921 - 19,261,400 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0179,715,464 - 9,729,950 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,897,612 - 9,912,065 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,897,768 - 9,912,065 (+)Ensemblpanpan1.1panPan2
OSBPL7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,139,641 - 24,156,692 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,139,630 - 24,154,924 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha923,607,684 - 23,624,709 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,934,673 - 24,951,704 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,934,695 - 24,949,974 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1923,704,814 - 23,721,844 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0923,965,653 - 23,982,678 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0924,092,310 - 24,109,348 (-)NCBIUU_Cfam_GSD_1.0
OSBPL7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,059,124 - 24,076,109 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,059,128 - 24,075,102 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,930,641 - 23,952,287 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OSBPL7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,208,121 - 68,222,684 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607739,258,654 - 39,273,203 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Osbpl7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247954,469,551 - 4,479,798 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247954,468,767 - 4,479,654 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000001641   ⟹   ENSSTOP00000001471
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649013,491,544 - 13,505,786 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000031624   ⟹   ENSSTOP00000025512
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649013,491,722 - 13,506,768 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000039354   ⟹   ENSSTOP00000032456
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649013,491,722 - 13,506,768 (+)Ensembl
RefSeq Acc Id: XM_005321743   ⟹   XP_005321800
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560223,568,394 - 23,583,463 (-)NCBI
SpeTri2.0NW_00493649013,491,704 - 13,506,742 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005726346
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560223,564,229 - 23,583,463 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005321800 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001471.3
  ENSSTOP00000025512.1
  ENSSTOP00000032456.1
GenBank Protein KAG3269144 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005321800   ⟸   XM_005321743
- UniProtKB: A0A287CW32 (UniProtKB/TrEMBL),   I3LYZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000025512   ⟸   ENSSTOT00000031624
RefSeq Acc Id: ENSSTOP00000032456   ⟸   ENSSTOT00000039354
RefSeq Acc Id: ENSSTOP00000001471   ⟸   ENSSTOT00000001641
Protein Domains
PH   Pleckstrin homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001636 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001641.3 UniProtKB/TrEMBL
  ENSSTOT00000031624.1 UniProtKB/TrEMBL
  ENSSTOT00000039354.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  2.40.160.120 UniProtKB/TrEMBL
  3.30.70.3490 UniProtKB/TrEMBL
InterPro OSBP_sf UniProtKB/TrEMBL
  Oxysterol-bd UniProtKB/TrEMBL
  Oxysterol-bd_CS UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_8 UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene Osbpl7 ENTREZGENE
PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 7 UniProtKB/TrEMBL
  PTHR10972 UniProtKB/TrEMBL
Pfam Oxysterol_BP UniProtKB/TrEMBL
  PH_8 UniProtKB/TrEMBL
PROSITE OSBP UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF144000 UniProtKB/TrEMBL
UniProt A0A287CW32 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DFW0_ICTTR UniProtKB/TrEMBL
  I3LYZ2 ENTREZGENE, UniProtKB/TrEMBL