Ahnak2 (AHNAK nucleoprotein 2) - Rat Genome Database

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Gene: Ahnak2 (AHNAK nucleoprotein 2) Ictidomys tridecemlineatus
Analyze
Symbol: Ahnak2
Name: AHNAK nucleoprotein 2
RGD ID: 12579157
Description: ASSOCIATED WITH cerebellar ataxia (ortholog); Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis 5 (ortholog); FOUND IN costamere (ortholog); cytoplasmic vesicle membrane (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,662,756 - 1,683,122 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936621486,855 - 512,079 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ahnak2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,662,756 - 1,683,122 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936621486,855 - 512,079 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHNAK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814104,937,253 - 104,978,374 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14104,937,244 - 104,978,374 (-)EnsemblGRCh38hg38GRCh38
GRCh3714105,403,590 - 105,444,711 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3614104,474,636 - 104,515,739 (-)NCBINCBI36Build 36hg18NCBI36
Celera1485,457,805 - 85,498,909 (-)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1485,597,412 - 85,638,515 (-)NCBIHuRef
CHM1_114105,341,352 - 105,382,455 (-)NCBICHM1_1
T2T-CHM13v2.01499,183,727 - 99,222,852 (-)NCBIT2T-CHM13v2.0
Ahnak2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,738,631 - 112,766,278 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12112,738,628 - 112,766,277 (-)EnsemblGRCm39 Ensembl
GRCm3812112,772,197 - 112,802,658 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12112,772,194 - 112,802,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712114,010,404 - 114,013,975 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612114,010,405 - 114,013,851 (-)NCBIMGSCv36mm8
Celera12113,987,981 - 113,991,552 (-)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.2NCBI
Ahnak2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86137,648,867 - 137,697,580 (-)NCBIGRCr8
mRatBN7.26131,830,668 - 131,876,311 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.06137,335,273 - 137,380,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06146,341,110 - 146,383,305 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46137,757,297 - 137,802,756 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16137,763,483 - 137,808,943 (-)NCBI
Celera6129,377,311 - 129,415,591 (-)NCBICelera
Cytogenetic Map6q32NCBI
Ahnak2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555383,305,664 - 3,315,094 (-)NCBIChiLan1.0ChiLan1.0
AHNAK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215106,121,879 - 106,163,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114105,338,381 - 105,380,178 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01485,587,016 - 85,627,319 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114105,372,577 - 105,391,480 (-)NCBIpanpan1.1PanPan1.1panPan2
AHNAK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,423,322 - 72,446,388 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha871,923,976 - 71,958,982 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0872,693,877 - 72,731,271 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1872,376,730 - 72,411,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0872,420,230 - 72,456,531 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0872,819,643 - 72,837,121 (-)NCBIUU_Cfam_GSD_1.0
AHNAK2
(Sus scrofa - pig)		 No map positions available.
AHNAK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12482,861,459 - 82,872,671 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605370,288,030 - 70,329,047 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040274287   ⟹   XP_040130221
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086401,669,682 - 1,683,122 (+)NCBI
RefSeq Acc Id: XM_040274288   ⟹   XP_040130222
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086401,669,682 - 1,683,122 (+)NCBI
RefSeq Acc Id: XM_040274289   ⟹   XP_040130223
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086401,662,756 - 1,683,122 (+)NCBI
RefSeq Acc Id: XM_040274291   ⟹   XP_040130225
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086401,669,682 - 1,683,122 (+)NCBI
RefSeq Acc Id: XM_040274292   ⟹   XP_040130226
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086401,669,682 - 1,683,122 (+)NCBI
RefSeq Acc Id: XM_040274293   ⟹   XP_040130227
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086401,662,756 - 1,683,122 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040130223   ⟸   XM_040274289
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040130227   ⟸   XM_040274293
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040130221   ⟸   XM_040274287
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040130222   ⟸   XM_040274288
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040130225   ⟸   XM_040274291
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040130226   ⟸   XM_040274292
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
NCBI Gene Ahnak2 ENTREZGENE