Ahnak2 (AHNAK nucleoprotein 2) - Rat Genome Database

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Gene: Ahnak2 (AHNAK nucleoprotein 2) Chinchilla lanigera
Analyze
Symbol: Ahnak2
Name: AHNAK nucleoprotein 2
RGD ID: 10154021
Description: ASSOCIATED WITH cerebellar ataxia (ortholog); Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis 5 (ortholog); FOUND IN costamere (ortholog); cytoplasmic vesicle membrane (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555383,305,664 - 3,315,094 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ahnak2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555383,305,664 - 3,315,094 (-)NCBIChiLan1.0ChiLan1.0
AHNAK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814104,937,253 - 104,978,374 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14104,937,244 - 104,978,374 (-)EnsemblGRCh38hg38GRCh38
GRCh3714105,403,590 - 105,444,711 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3614104,474,636 - 104,515,739 (-)NCBINCBI36Build 36hg18NCBI36
Celera1485,457,805 - 85,498,909 (-)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1485,597,412 - 85,638,515 (-)NCBIHuRef
CHM1_114105,341,352 - 105,382,455 (-)NCBICHM1_1
T2T-CHM13v2.01499,183,727 - 99,222,852 (-)NCBIT2T-CHM13v2.0
Ahnak2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,738,631 - 112,766,278 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12112,738,628 - 112,766,277 (-)EnsemblGRCm39 Ensembl
GRCm3812112,772,197 - 112,802,658 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12112,772,194 - 112,802,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712114,010,404 - 114,013,975 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612114,010,405 - 114,013,851 (-)NCBIMGSCv36mm8
Celera12113,987,981 - 113,991,552 (-)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.2NCBI
Ahnak2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86137,648,867 - 137,697,580 (-)NCBIGRCr8
mRatBN7.26131,830,668 - 131,876,311 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.06137,335,273 - 137,380,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06146,341,110 - 146,383,305 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46137,757,297 - 137,802,756 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16137,763,483 - 137,808,943 (-)NCBI
Celera6129,377,311 - 129,415,591 (-)NCBICelera
Cytogenetic Map6q32NCBI
AHNAK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215106,121,879 - 106,163,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114105,338,381 - 105,380,178 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01485,587,016 - 85,627,319 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114105,372,577 - 105,391,480 (-)NCBIpanpan1.1PanPan1.1panPan2
AHNAK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,423,322 - 72,446,388 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha871,923,976 - 71,958,982 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0872,693,877 - 72,731,271 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1872,376,730 - 72,411,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0872,420,230 - 72,456,531 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0872,819,643 - 72,837,121 (-)NCBIUU_Cfam_GSD_1.0
Ahnak2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,662,756 - 1,683,122 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936621486,855 - 512,079 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHNAK2
(Sus scrofa - pig)		 No map positions available.
AHNAK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12482,861,459 - 82,872,671 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605370,288,030 - 70,329,047 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013507883   ⟹   XP_013363337
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555383,305,664 - 3,315,094 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013363337 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013363337   ⟸   XM_013507883
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Ahnak2 ENTREZGENE