Gusb (glucuronidase beta) - Rat Genome Database

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Gene: Gusb (glucuronidase beta) Ictidomys tridecemlineatus
Analyze
Symbol: Gusb
Name: glucuronidase beta
RGD ID: 12552701
Description: ENCODES a protein that exhibits beta-glucuronidase activity (ortholog); carbohydrate binding (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); glucuronoside catabolic process (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; congenital sucrase-isomaltase deficiency pathway; erythropoietic porphyria pathway; ASSOCIATED WITH argininosuccinic aciduria (ortholog); autism spectrum disorder (ortholog); Experimental Arthritis (ortholog); FOUND IN lysosomal lumen (ortholog); lysosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-glucuronidase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,304,099 - 126,314,709 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,721,763 - 7,731,897 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,721,273 - 7,732,468 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gusb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,304,099 - 126,314,709 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,721,763 - 7,731,897 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,721,273 - 7,732,468 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GUSB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38765,960,684 - 65,982,213 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl765,960,684 - 65,982,215 (-)EnsemblGRCh38hg38GRCh38
GRCh37765,425,671 - 65,447,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36765,063,106 - 65,084,681 (-)NCBINCBI36Build 36hg18NCBI36
Build 34764,869,824 - 64,891,346NCBI
Celera766,666,375 - 66,688,005 (+)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef761,613,080 - 61,634,635 (-)NCBIHuRef
CHM1_1765,520,933 - 65,542,533 (-)NCBICHM1_1
T2T-CHM13v2.0767,182,808 - 67,204,306 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2764,763,190 - 64,784,820 (-)NCBI
Gusb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,011,278 - 130,031,890 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,017,852 - 130,031,890 (-)EnsemblGRCm39 Ensembl
GRCm385129,989,011 - 130,003,049 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,989,011 - 130,003,049 (-)EnsemblGRCm38mm10GRCm38
MGSCv375130,464,891 - 130,478,698 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,273,724 - 130,287,531 (-)NCBIMGSCv36mm8
Celera5126,991,862 - 127,006,971 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.32NCBI
Gusb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,337,281 - 32,350,838 (+)NCBIGRCr8
mRatBN7.21226,701,188 - 26,714,718 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,697,951 - 26,726,905 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,848,970 - 27,862,457 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,459,495 - 28,472,985 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,520,988 - 27,534,476 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,202,066 - 30,215,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,198,822 - 30,227,771 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,139,367 - 32,152,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,744,409 - 27,757,755 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,607,658 - 27,620,971 (+)NCBI
Celera1228,414,852 - 28,428,552 (+)NCBICelera
Cytogenetic Map12q12NCBI
Gusb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,378,654 - 8,392,252 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,377,161 - 8,392,298 (-)NCBIChiLan1.0ChiLan1.0
GUSB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2681,270,069 - 81,293,057 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17129,597,227 - 129,619,836 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0760,087,130 - 60,109,289 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1764,724,628 - 64,745,040 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl764,724,841 - 64,744,909 (-)Ensemblpanpan1.1panPan2
GUSB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16730,345 - 743,916 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6730,358 - 779,424 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,430,980 - 2,444,321 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06535,764 - 548,724 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6535,765 - 549,610 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16479,152 - 492,513 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06473,517 - 486,454 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06644,508 - 657,770 (-)NCBIUU_Cfam_GSD_1.0
GUSB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,671,389 - 16,689,203 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,672,071 - 16,686,520 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,924,697 - 16,939,444 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103246571
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1281,621,293 - 1,646,097 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl281,620,359 - 1,646,075 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607015,002,837 - 15,024,286 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gusb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,390,197 - 8,401,387 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,390,096 - 8,401,063 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000008875   ⟹   ENSSTOP00000007951
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365437,721,763 - 7,731,897 (+)Ensembl
RefSeq Acc Id: XM_013360088   ⟹   XP_013215542
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344126,304,099 - 126,314,709 (-)NCBI
SpeTri2.0NW_0049365437,721,916 - 7,732,468 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013215542 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007951.3
RefSeq Acc Id: XP_013215542   ⟸   XM_013360088
- Sequence:
RefSeq Acc Id: ENSSTOP00000007951   ⟸   ENSSTOT00000008875

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008865 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008875.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Glycosidases UniProtKB/TrEMBL
InterPro Beta-gal/glucu_dom_sf UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Glyco_hydro_2 UniProtKB/TrEMBL
  Glyco_hydro_2_AS UniProtKB/TrEMBL
  Glyco_hydro_2_cat UniProtKB/TrEMBL
  Glyco_hydro_2_CS UniProtKB/TrEMBL
  Glyco_hydro_2_Ig-like UniProtKB/TrEMBL
  Glyco_hydro_2_N UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
NCBI Gene Gusb ENTREZGENE
PANTHER BETA-GLUCURONIDASE UniProtKB/TrEMBL
  BETA-GLUCURONIDASE UniProtKB/TrEMBL
Pfam Glyco_hydro_2 UniProtKB/TrEMBL
  Glyco_hydro_2_C UniProtKB/TrEMBL
  Glyco_hydro_2_N UniProtKB/TrEMBL
PRINTS GLHYDRLASE2 UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F2_1 UniProtKB/TrEMBL
  GLYCOSYL_HYDROL_F2_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49303 UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF51445 UniProtKB/TrEMBL
UniProt I3MCG4_ICTTR UniProtKB/TrEMBL