Mfsd3 (major facilitator superfamily domain containing 3) - Rat Genome Database

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Gene: Mfsd3 (major facilitator superfamily domain containing 3) Ictidomys tridecemlineatus
Analyze
Symbol: Mfsd3
Name: major facilitator superfamily domain containing 3
RGD ID: 12548438
Description: ENCODES a protein that exhibits transmembrane transporter activity (inferred); INVOLVED IN transmembrane transport (inferred); ASSOCIATED WITH Baller-Gerold syndrome (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: major facilitator superfamily domain containing 3, transcript variant X1; major facilitator superfamily domain containing 3, transcript variant X2; major facilitator superfamily domain containing 3, transcript variant X3; major facilitator superfamily domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303322,385 - 338,143 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,761,721 - 7,764,269 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,761,645 - 7,764,230 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mfsd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303322,385 - 338,143 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,761,721 - 7,764,269 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,761,645 - 7,764,230 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MFSD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,509,070 - 144,511,213 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,509,070 - 144,511,213 (+)EnsemblGRCh38hg38GRCh38
GRCh378145,734,453 - 145,736,596 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,705,360 - 145,707,397 (+)NCBINCBI36Build 36hg18NCBI36
Celera8141,910,025 - 141,912,062 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,847,710 - 140,849,747 (+)NCBIHuRef
CHM1_18145,772,744 - 145,774,781 (+)NCBICHM1_1
T2T-CHM13v2.08145,678,836 - 145,680,979 (+)NCBIT2T-CHM13v2.0
Mfsd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,585,742 - 76,588,439 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,585,665 - 76,588,439 (+)EnsemblGRCm39 Ensembl
GRCm381576,701,542 - 76,704,239 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,701,465 - 76,704,239 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,531,972 - 76,534,669 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,528,797 - 76,531,494 (+)NCBIMGSCv36mm8
Celera1578,195,152 - 78,197,849 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.28NCBI
Mfsd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,300,254 - 110,304,108 (+)NCBIGRCr8
mRatBN7.27108,419,644 - 108,423,469 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,421,350 - 108,423,461 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,163,386 - 110,165,387 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,386,960 - 112,388,961 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,347,709 - 112,349,711 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,763,395 - 117,765,904 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,763,783 - 117,766,464 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,750,082 - 117,753,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,750,871 - 114,752,873 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7104,771,355 - 104,773,357 (+)NCBICelera
Cytogenetic Map7q34NCBI
Mfsd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,132,762 - 3,136,109 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,132,761 - 3,139,501 (+)NCBIChiLan1.0ChiLan1.0
MFSD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27162,000,295 - 162,002,502 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,529,267 - 137,531,732 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl8144,264,507 - 144,267,218 (+)Ensemblpanpan1.1panPan2
MFSD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,928,890 - 37,930,828 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,928,996 - 37,934,233 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,889,480 - 37,891,362 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,402,461 - 38,404,343 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,402,433 - 38,404,406 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,094,413 - 38,096,295 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,202,829 - 38,204,711 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,679,302 - 38,681,184 (+)NCBIUU_Cfam_GSD_1.0
MFSD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4293,708 - 295,789 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14293,707 - 295,955 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24384,712 - 386,989 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MFSD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,721,514 - 138,725,434 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,723,161 - 138,725,389 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,129,531 - 1,132,901 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mfsd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,351,770 - 12,355,149 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,351,770 - 12,355,271 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000010155   ⟹   ENSSTOP00000009110
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364707,761,923 - 7,763,757 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000030633   ⟹   ENSSTOP00000028226
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364707,761,859 - 7,764,269 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000036906   ⟹   ENSSTOP00000030191
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364707,761,721 - 7,764,269 (-)Ensembl
RefSeq Acc Id: XM_005316023   ⟹   XP_005316080
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303335,776 - 338,141 (-)NCBI
SpeTri2.0NW_0049364707,761,882 - 7,764,230 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021723139   ⟹   XP_021578814
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303335,689 - 338,143 (-)NCBI
SpeTri2.0NW_0049364707,761,745 - 7,764,230 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040293441   ⟹   XP_040149375
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303322,385 - 338,141 (-)NCBI
RefSeq Acc Id: XR_005737624
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303322,385 - 338,141 (-)NCBI
RefSeq Acc Id: XP_005316080   ⟸   XM_005316023
- Peptide Label: isoform X1
- UniProtKB: A0A287D3R8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578814   ⟸   XM_021723139
- Peptide Label: isoform X2
- UniProtKB: A0A287D9K6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040149375   ⟸   XM_040293441
- Peptide Label: isoform X3
- UniProtKB: A0A287D9K6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000030191   ⟸   ENSSTOT00000036906
RefSeq Acc Id: ENSSTOP00000009110   ⟸   ENSSTOT00000010155
RefSeq Acc Id: ENSSTOP00000028226   ⟸   ENSSTOT00000030633


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010160 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010155.3 UniProtKB/TrEMBL
  ENSSTOT00000030633.1 UniProtKB/TrEMBL
  ENSSTOT00000036906.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro AmpG_permease/AT-1 UniProtKB/TrEMBL
  MFS UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene Mfsd3 ENTREZGENE
PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  PTHR12778 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A287D3R8 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D9K6 ENTREZGENE, UniProtKB/TrEMBL
  I3MEY0_ICTTR UniProtKB/TrEMBL