Stard9 (StAR related lipid transfer domain containing 9) - Rat Genome Database

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Gene: Stard9 (StAR related lipid transfer domain containing 9) Ictidomys tridecemlineatus
Analyze
Symbol: Stard9
Name: StAR related lipid transfer domain containing 9
RGD ID: 12515245
Description: ENCODES a protein that exhibits ATP binding (inferred); lipid binding (inferred); microtubule binding (inferred); INVOLVED IN microtubule-based movement (inferred); spindle assembly (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); bipolar disorder (ortholog); Bloom syndrome (ortholog); FOUND IN centriole (inferred); cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: StAR related lipid transfer domain containing 9, transcript variant X1; StAR related lipid transfer domain containing 9, transcript variant X2; StAR related lipid transfer domain containing 9, transcript variant X3; stAR-related lipid transfer protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364715,842,887 - 5,986,988 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IEA)
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stard9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364715,842,887 - 5,986,988 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381542,575,606 - 42,720,998 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1542,575,606 - 42,720,998 (+)EnsemblGRCh38hg38GRCh38
GRCh371542,867,804 - 43,013,196 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,744,722 - 40,800,488 (+)NCBINCBI36Build 36hg18NCBI36
Build 341540,769,707 - 40,800,347NCBI
Celera1519,635,565 - 19,780,951 (+)NCBICelera
Cytogenetic Map15q15.2NCBI
HuRef1519,716,325 - 19,861,782 (+)NCBIHuRef
CHM1_11542,986,298 - 43,131,570 (+)NCBICHM1_1
T2T-CHM13v2.01540,382,607 - 40,528,130 (+)NCBIT2T-CHM13v2.0
Stard9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,459,567 - 120,562,371 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,459,602 - 120,562,376 (+)EnsemblGRCm39 Ensembl
GRCm382120,629,086 - 120,729,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,629,121 - 120,731,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv372120,454,960 - 120,541,822 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,320,567 - 120,393,363 (+)NCBIMGSCv36mm8
Celera2121,783,495 - 121,869,440 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
Stard9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,034,866 - 128,150,493 (+)NCBIGRCr8
mRatBN7.23107,581,097 - 107,672,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,581,164 - 107,673,898 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03112,428,361 - 112,659,558 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,428,395 - 112,659,140 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,200,597 - 119,203,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.03118,973,922 - 119,052,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43107,401,960 - 107,492,695 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3106,486,870 - 106,577,463 (+)NCBICelera
Cytogenetic Map3q35NCBI
Stard9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554169,276,026 - 9,393,842 (+)NCBIChiLan1.0ChiLan1.0
STARD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,826,722 - 31,971,203 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,981,718 - 36,128,864 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01521,537,229 - 21,681,651 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,692,013 - 39,836,032 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,692,013 - 39,836,032 (+)Ensemblpanpan1.1panPan2
STARD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,519,994 - 9,653,743 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,520,098 - 9,654,166 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,577,259 - 9,711,737 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,654,823 - 9,789,542 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1309,574,086 - 9,708,057 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,680,839 - 9,815,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,813,363 - 9,947,976 (+)NCBIUU_Cfam_GSD_1.0
STARD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11128,656,375 - 128,808,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21143,551,485 - 143,701,252 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,251,337 - 40,402,700 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,250,832 - 40,324,816 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048100,610,097 - 100,764,202 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248049,690,054 - 9,840,816 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013359357   ⟹   XP_013214811
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBI
SpeTri2.0NW_0049364715,842,887 - 5,986,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726132   ⟹   XP_021581807
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBI
SpeTri2.0NW_0049364715,842,887 - 5,986,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040275264   ⟹   XP_040131198
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBI
RefSeq Acc Id: XM_040275265   ⟹   XP_040131199
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBI
RefSeq Acc Id: XM_040275266   ⟹   XP_040131200
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBI
RefSeq Acc Id: XM_040275267   ⟹   XP_040131201
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBI
RefSeq Acc Id: XM_040275268   ⟹   XP_040131202
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBI
RefSeq Acc Id: XM_040275269   ⟹   XP_040131203
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,998,044 - 88,138,972 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013214811   ⟸   XM_013359357
- Peptide Label: isoform X8
- UniProtKB: I3NDJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581807   ⟸   XM_021726132
- Peptide Label: isoform X3
- UniProtKB: I3NDJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131198   ⟸   XM_040275264
- Peptide Label: isoform X1
- UniProtKB: I3NDJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131199   ⟸   XM_040275265
- Peptide Label: isoform X2
- UniProtKB: I3NDJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131201   ⟸   XM_040275267
- Peptide Label: isoform X5
- UniProtKB: I3NDJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131200   ⟸   XM_040275266
- Peptide Label: isoform X4
- UniProtKB: I3NDJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131202   ⟸   XM_040275268
- Peptide Label: isoform X6
- UniProtKB: I3NDJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131203   ⟸   XM_040275269
- Peptide Label: isoform X7
- UniProtKB: I3NDJ1 (UniProtKB/TrEMBL)
Protein Domains
FHA   Kinesin motor   START


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024994 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027076.2 UniProtKB/TrEMBL
  ENSSTOT00000031413.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  3.30.530.20 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
NCBI Gene Stard9 ENTREZGENE
PANTHER PTHR47117 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
  KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
  KISc UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
  SSF49879 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A287DFN5_ICTTR UniProtKB/TrEMBL
  I3NDJ1 ENTREZGENE, UniProtKB/TrEMBL