Ankk1 (ankyrin repeat and kinase domain containing 1) - Rat Genome Database

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Gene: Ankk1 (ankyrin repeat and kinase domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ankk1
Name: ankyrin repeat and kinase domain containing 1
RGD ID: 12478575
Description: INVOLVED IN cellular response to retinoic acid (ortholog); regulation of cell cycle process (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); alcohol-induced mental disorder (ortholog); FOUND IN cell projection (ortholog); cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and protein kinase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494795,531,923 - 95,543,648 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366121,161,961 - 1,173,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell projection  (ISO)
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ankk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494795,531,923 - 95,543,648 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366121,161,961 - 1,173,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811113,387,779 - 113,400,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11113,387,779 - 113,400,416 (+)EnsemblGRCh38hg38GRCh38
GRCh3711113,258,501 - 113,271,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611112,763,723 - 112,776,350 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411112,763,722 - 112,776,350NCBI
Celera11110,411,445 - 110,424,071 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11109,186,137 - 109,198,762 (+)NCBIHuRef
CHM1_111113,141,499 - 113,154,124 (+)NCBICHM1_1
T2T-CHM13v2.011113,398,282 - 113,410,917 (+)NCBIT2T-CHM13v2.0
Ankk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39949,326,494 - 49,338,341 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl949,326,494 - 49,338,321 (-)EnsemblGRCm39 Ensembl
GRCm38949,415,194 - 49,427,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl949,415,194 - 49,427,021 (-)EnsemblGRCm38mm10GRCm38
MGSCv37949,223,327 - 49,235,126 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36949,167,452 - 49,179,251 (-)NCBIMGSCv36mm8
Celera946,712,988 - 46,724,868 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.83NCBI
Ankk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,676,327 - 58,685,012 (-)NCBIGRCr8
mRatBN7.2849,779,862 - 49,788,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,779,862 - 49,788,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx855,283,981 - 55,292,160 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0853,562,857 - 53,571,036 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0851,427,117 - 51,435,296 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0853,750,631 - 53,758,925 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,751,091 - 53,758,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0852,370,801 - 52,378,944 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4852,714,745 - 52,722,913 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1852,734,164 - 52,741,935 (-)NCBI
Celera849,331,721 - 49,340,015 (-)NCBICelera
Cytogenetic Map8q23NCBI
Ankk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541215,035,388 - 15,046,139 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541215,036,071 - 15,046,118 (+)NCBIChiLan1.0ChiLan1.0
ANKK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29114,132,094 - 114,145,920 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111115,226,472 - 115,240,295 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011108,267,717 - 108,280,635 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111112,111,003 - 112,125,952 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11112,111,003 - 112,123,382 (+)Ensemblpanpan1.1panPan2
ANKK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,801,511 - 19,814,359 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,801,542 - 19,814,481 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha519,723,265 - 19,736,301 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0519,822,410 - 19,835,444 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,822,441 - 19,835,756 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,884,965 - 19,897,951 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,786,175 - 19,799,184 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,833,938 - 19,846,967 (-)NCBIUU_Cfam_GSD_1.0
ANKK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11104,752,023 - 104,765,071 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604321,245,489 - 21,261,506 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247848,810,559 - 8,820,444 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247848,810,409 - 8,821,732 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040283767   ⟹   XP_040139701
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494795,531,923 - 95,543,648 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040139701 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040139701   ⟸   XM_040283767


Additional Information

Database Acc Id Source(s)
NCBI Gene Ankk1 ENTREZGENE