Fbxw4 (F-box and WD repeat domain containing 4) - Rat Genome Database

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Gene: Fbxw4 (F-box and WD repeat domain containing 4) Ictidomys tridecemlineatus
Analyze
Symbol: Fbxw4
Name: F-box and WD repeat domain containing 4
RGD ID: 12474207
Description: INVOLVED IN cartilage development (ortholog); embryonic digit morphogenesis (ortholog); limb development (ortholog); ASSOCIATED WITH genetic disease (ortholog); split hand-foot malformation (ortholog); split hand-foot malformation 3 (ortholog); FOUND IN SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box and WD repeat domain containing 4, transcript variant X1; F-box and WD repeat domain containing 4, transcript variant X2; F-box and WD repeat domain containing 4, transcript variant X3; F-box and WD repeat domain containing 4, transcript variant X4; F-box/WD repeat-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721332,469,518 - 32,558,996 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366004,073,384 - 4,161,588 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366004,072,749 - 4,162,220 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fbxw4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721332,469,518 - 32,558,996 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366004,073,384 - 4,161,588 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366004,072,749 - 4,162,220 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXW4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810101,610,666 - 101,695,295 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10101,610,664 - 101,695,295 (-)EnsemblGRCh38hg38GRCh38
GRCh3710103,370,423 - 103,455,052 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610103,360,411 - 103,444,733 (-)NCBINCBI36Build 36hg18NCBI36
Celera1097,109,207 - 97,193,536 (-)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,000,717 - 97,084,921 (-)NCBIHuRef
CHM1_110103,654,100 - 103,738,441 (-)NCBICHM1_1
T2T-CHM13v2.010102,494,739 - 102,578,296 (-)NCBIT2T-CHM13v2.0
Fbxw4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391945,566,693 - 45,648,954 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1945,566,693 - 45,648,751 (-)EnsemblGRCm39 Ensembl
GRCm381945,578,254 - 45,660,520 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1945,578,254 - 45,660,312 (-)EnsemblGRCm38mm10GRCm38
MGSCv371945,652,747 - 45,734,683 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361945,631,568 - 45,713,504 (-)NCBIMGSCv36mm8
Celera1946,345,905 - 46,428,364 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.75NCBI
Fbxw4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81254,375,921 - 254,465,173 (-)NCBIGRCr8
mRatBN7.21244,426,892 - 244,514,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1244,426,896 - 244,514,163 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1252,568,588 - 252,655,050 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01259,271,799 - 259,352,963 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01251,918,142 - 252,005,105 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01265,318,526 - 265,420,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1265,318,526 - 265,420,503 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01270,474,853 - 270,499,913 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41250,746,869 - 250,874,460 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,007,474 - 251,135,492 (-)NCBI
Celera1240,235,760 - 240,322,798 (-)NCBICelera
Cytogenetic Map1q54NCBI
Fbxw4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554858,584,836 - 8,669,705 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554858,584,836 - 8,688,416 (+)NCBIChiLan1.0ChiLan1.0
FBXW4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28113,496,596 - 113,581,162 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110113,501,913 - 113,586,510 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01098,212,907 - 98,297,477 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110101,685,804 - 101,769,277 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10101,685,804 - 101,769,672 (-)Ensemblpanpan1.1panPan2
FBXW4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,219,724 - 14,336,846 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,219,893 - 14,301,924 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2814,388,454 - 14,505,308 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02814,687,904 - 14,804,731 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2814,688,073 - 14,769,794 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,232,621 - 14,351,242 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02814,274,140 - 14,390,820 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02814,406,279 - 14,523,118 (-)NCBIUU_Cfam_GSD_1.0
FBXW4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14112,638,204 - 112,736,056 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114112,628,988 - 112,736,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214122,381,573 - 122,481,033 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXW4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1994,634,721 - 94,722,156 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl994,635,347 - 94,721,439 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604855,710,938 - 55,797,860 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxw4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248311,107,689 - 1,183,958 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248311,107,689 - 1,183,839 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000011494   ⟹   ENSSTOP00000010315
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366004,073,384 - 4,161,588 (+)Ensembl
RefSeq Acc Id: XM_005333656   ⟹   XP_005333713
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721332,469,555 - 32,558,996 (+)NCBI
SpeTri2.0NW_0049366004,072,780 - 4,162,220 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731879   ⟹   XP_021587554
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721332,469,518 - 32,558,993 (+)NCBI
SpeTri2.0NW_0049366004,072,749 - 4,162,220 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333713 (Get FASTA)   NCBI Sequence Viewer  
  XP_021587554 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010315.3
GenBank Protein KAG3264221 (Get FASTA)   NCBI Sequence Viewer  
  KAG3264222 (Get FASTA)   NCBI Sequence Viewer  
  KAG3264223 (Get FASTA)   NCBI Sequence Viewer  
  KAG3264224 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005333713   ⟸   XM_005333656
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021587554   ⟸   XM_021731879
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000010315   ⟸   ENSSTOT00000011494
Protein Domains
F-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011495 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011494.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Fbxw4 ENTREZGENE
PANTHER DACTYLIN UniProtKB/TrEMBL
  F-BOX/WD REPEAT-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt I3MHF7_ICTTR UniProtKB/TrEMBL