Efcab9 (EF-hand calcium binding domain 9) - Rat Genome Database

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Gene: Efcab9 (EF-hand calcium binding domain 9) Ictidomys tridecemlineatus
Analyze
Symbol: Efcab9
Name: EF-hand calcium binding domain 9
RGD ID: 12453673
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium ion sensor activity (inferred); INVOLVED IN flagellated sperm motility (inferred); sperm capacitation (inferred); spermatogenesis (inferred); FOUND IN CatSper complex (inferred); cytoplasm (inferred); sperm principal piece (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EF-hand calcium-binding domain-containing protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721394,359,430 - 94,364,093 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366093,082,264 - 3,086,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366093,082,136 - 3,086,721 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Efcab9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721394,359,430 - 94,364,093 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366093,082,264 - 3,086,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366093,082,136 - 3,086,721 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFCAB9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385172,194,172 - 172,203,454 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5172,194,172 - 172,203,454 (+)EnsemblGRCh38hg38GRCh38
GRCh375171,621,176 - 171,630,458 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365171,553,782 - 171,570,743 (+)NCBINCBI36Build 36hg18NCBI36
Celera5167,653,587 - 167,662,872 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5166,716,995 - 166,726,283 (+)NCBIHuRef
CHM1_15171,053,835 - 171,063,704 (+)NCBICHM1_1
T2T-CHM13v2.05172,734,472 - 172,743,747 (+)NCBIT2T-CHM13v2.0
Efcab9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,472,733 - 32,483,144 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,472,751 - 32,482,081 (-)EnsemblGRCm39 Ensembl
GRCm381132,522,733 - 32,533,240 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,522,751 - 32,532,081 (-)EnsemblGRCm38mm10GRCm38
MGSCv371132,422,733 - 32,427,574 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,422,751 - 32,427,579 (-)NCBIMGSCv36mm8
Celera1134,942,118 - 34,946,959 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.97NCBI
Efcab9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81017,611,408 - 17,616,566 (-)NCBIGRCr8
mRatBN7.21017,107,123 - 17,112,282 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1017,107,123 - 17,112,289 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1021,852,847 - 21,857,904 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01021,341,450 - 21,346,507 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01016,832,035 - 16,837,089 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01017,399,291 - 17,406,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1017,407,979 - 17,415,251 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01017,291,887 - 17,293,606 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41017,367,983 - 17,373,610 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1016,753,816 - 16,758,829 (-)NCBICelera
Cytogenetic Map10q12NCBI
Efcab9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540824,988,212 - 24,993,963 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540824,987,401 - 24,993,284 (+)NCBIChiLan1.0ChiLan1.0
EFCAB9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24167,333,910 - 167,359,342 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15165,473,450 - 165,483,200 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05167,545,205 - 167,554,563 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15174,461,056 - 174,470,489 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5174,461,056 - 174,470,489 (+)Ensemblpanpan1.1panPan2
EFCAB9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1440,055,027 - 40,076,789 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl440,055,159 - 40,076,729 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha440,001,892 - 40,023,564 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0440,428,550 - 40,450,227 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl440,444,434 - 40,450,501 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1440,243,974 - 40,265,642 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0440,433,762 - 40,455,436 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,943,872 - 40,965,549 (-)NCBIUU_Cfam_GSD_1.0
EFCAB9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1651,987,768 - 52,007,563 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11651,987,090 - 51,996,019 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21656,427,488 - 56,437,225 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFCAB9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12374,360,052 - 74,369,105 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2374,360,551 - 74,368,822 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660344,253,617 - 4,263,104 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efcab9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473317,813,429 - 17,818,512 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473317,813,381 - 17,818,562 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021732306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000023994   ⟹   ENSSTOP00000016167
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366093,082,264 - 3,086,721 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000038325   ⟹   ENSSTOP00000026942
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366093,082,864 - 3,083,845 (-)Ensembl
RefSeq Acc Id: XM_021732306   ⟹   XP_021587981
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721394,359,430 - 94,364,093 (-)NCBI
SpeTri2.0NW_0049366093,082,136 - 3,086,721 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021587981 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016167.2
  ENSSTOP00000026942.1
GenBank Protein KAG3265264 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021587981   ⟸   XM_021732306
- UniProtKB: I3MVM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000016167   ⟸   ENSSTOT00000023994
RefSeq Acc Id: ENSSTOP00000026942   ⟸   ENSSTOT00000038325
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020218 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023994.2 UniProtKB/TrEMBL
  ENSSTOT00000038325.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  EFCAB9 UniProtKB/TrEMBL
NCBI Gene Efcab9 ENTREZGENE
PANTHER EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 9 UniProtKB/TrEMBL
  PTHR47065 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A287D051_ICTTR UniProtKB/TrEMBL
  I3MVM2 ENTREZGENE, UniProtKB/TrEMBL