LOC102153191 (membrane-spanning 4-domains subfamily A member 4A-like) - Rat Genome Database

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Gene: LOC102153191 (membrane-spanning 4-domains subfamily A member 4A-like) Canis lupus familiaris
Analyze
Symbol: LOC102153191
Name: membrane-spanning 4-domains subfamily A member 4A-like
RGD ID: 12398893
Description: ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN Golgi apparatus (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12150,497,486 - 50,504,173 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2149,936,895 - 49,944,920 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02151,668,967 - 51,677,011 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12150,716,461 - 50,724,482 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02150,815,733 - 50,821,947 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02151,438,692 - 51,446,753 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
LOC102153191
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12150,497,486 - 50,504,173 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2149,936,895 - 49,944,920 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02151,668,967 - 51,677,011 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12150,716,461 - 50,724,482 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02150,815,733 - 50,821,947 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02151,438,692 - 51,446,753 (-)NCBIUU_Cfam_GSD_1.0
MS4A8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,699,612 - 60,715,807 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,699,585 - 60,715,807 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,467,085 - 60,483,280 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,223,623 - 60,239,860 (+)NCBINCBI36Build 36hg18NCBI36
Build 341160,223,622 - 60,239,858NCBI
Celera1157,831,254 - 57,847,490 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1156,813,422 - 56,829,655 (+)NCBIHuRef
CHM1_11160,333,125 - 60,349,358 (+)NCBICHM1_1
T2T-CHM13v2.01160,650,773 - 60,666,970 (+)NCBIT2T-CHM13v2.0
Ms4a8a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,044,835 - 11,058,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,044,835 - 11,058,466 (-)EnsemblGRCm39 Ensembl
GRCm381911,067,471 - 11,081,103 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,067,471 - 11,081,102 (-)EnsemblGRCm38mm10GRCm38
MGSCv371911,141,961 - 11,155,593 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361911,134,516 - 11,148,073 (-)NCBIMGSCv36mm8
Celera1911,758,959 - 11,772,928 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.62NCBI
Ms4a8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,155,557 - 217,169,151 (-)NCBIGRCr8
mRatBN7.21207,730,665 - 207,744,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,730,665 - 207,744,324 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,105,502 - 216,119,101 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,165,601 - 223,179,274 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,859,903 - 215,873,498 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01227,136,154 - 227,149,748 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1227,136,154 - 227,149,748 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01234,203,005 - 234,216,599 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41213,583,486 - 213,597,080 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11213,741,912 - 213,785,366 (-)NCBI
Celera1205,215,300 - 205,228,872 (-)NCBICelera
Cytogenetic Map1q43NCBI
MS4A8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2961,871,137 - 61,887,198 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11162,915,230 - 62,931,252 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,965,123 - 55,981,042 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,406,395 - 59,422,277 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,406,395 - 59,422,277 (+)Ensemblpanpan1.1panPan2
Ms4a8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494712,146,900 - 12,157,540 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365812,261,090 - 2,271,213 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365812,260,960 - 2,270,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MS4A8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,989,969 - 11,007,621 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,989,947 - 11,007,621 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MS4A8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,125,146 - 13,140,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,123,461 - 13,140,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,480,437 - 110,495,367 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC102153191
130 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 3 7 6 1 6 6 6 6
Below cutoff 2 5 15 5 5 11 8 4

Sequence


Reference Sequences
RefSeq Acc Id: XM_014122506   ⟹   XP_013977981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12150,497,486 - 50,504,173 (-)NCBI
Dog10K_Boxer_Tasha2149,936,895 - 49,944,920 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022407956   ⟹   XP_022263664
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12150,497,486 - 50,501,903 (-)NCBI
Dog10K_Boxer_Tasha2149,939,007 - 49,944,920 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038430754   ⟹   XP_038286682
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02151,671,079 - 51,677,011 (-)NCBI
RefSeq Acc Id: XM_038430755   ⟹   XP_038286683
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02151,668,967 - 51,677,011 (-)NCBI
RefSeq Acc Id: XM_038506082   ⟹   XP_038362010
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12150,716,461 - 50,724,482 (-)NCBI
RefSeq Acc Id: XM_038506083   ⟹   XP_038362011
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12150,716,461 - 50,724,482 (-)NCBI
RefSeq Acc Id: XM_038569319   ⟹   XP_038425247
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02151,440,804 - 51,446,753 (-)NCBI
RefSeq Acc Id: XM_038569320   ⟹   XP_038425248
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02151,438,692 - 51,446,753 (-)NCBI
RefSeq Acc Id: XM_038633505   ⟹   XP_038489433
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02150,815,733 - 50,821,947 (-)NCBI
RefSeq Acc Id: XM_038633506   ⟹   XP_038489434
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02150,815,733 - 50,821,947 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013977981   ⟸   XM_014122506
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NT83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022263664   ⟸   XM_022407956
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NT83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038362010   ⟸   XM_038506082
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038362011   ⟸   XM_038506083
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038489433   ⟸   XM_038633505
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038489434   ⟸   XM_038633506
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038286683   ⟸   XM_038430755
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PBZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286682   ⟸   XM_038430754
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PBZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425248   ⟸   XM_038569320
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NT83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425247   ⟸   XM_038569319
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NT83 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030305 UniProtKB/TrEMBL
  ENSCAFG00845020017 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000044504.3 UniProtKB/TrEMBL
  ENSCAFT00845035263 ENTREZGENE
  ENSCAFT00845035263.1 UniProtKB/TrEMBL
InterPro MS4A UniProtKB/TrEMBL
KEGG Report cfa:102153191 UniProtKB/TrEMBL
NCBI Gene LOC102153191 ENTREZGENE
PANTHER MEMBRANE-SPANNING 4-DOMAINS, SUBFAMILY A, MEMBER 4A UniProtKB/TrEMBL
  PTHR23320 UniProtKB/TrEMBL
UniProt A0A8I3PBZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NT83 ENTREZGENE, UniProtKB/TrEMBL