IRF9 (interferon regulatory factor 9)

Gene: IRF9 (interferon regulatory factor 9) Canis lupus familiaris

Analyze

Symbol:

IRF9 (Ensembl: RNF31)

Name:

interferon regulatory factor 9 (Ensembl:ring finger protein 31)

RGD ID:

12376481

Description:

ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN type II interferon signaling pathway; ASSOCIATED WITH acute pancreatitis (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); Experimental Colitis (ortholog); FOUND IN ISGF3 complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

interferon-stimulated transcription factor 3, gamma 48kDa; ISGF3G

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	4,152,146 - 4,157,201 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	4,073,839 - 4,078,885 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	4,262,726 - 4,267,771 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	4,252,109 - 4,302,591 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,953,354 - 3,958,397 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	4,015,093 - 4,020,132 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	4,277,257 - 4,282,303 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute pancreatitis (ISO)

Brain-Lung-Thyroid Syndrome (ISO)

Experimental Colitis (ISO)

familial hyperlipidemia (ISO)

genetic disease (ISO)

genital herpes (ISO)

hepatitis C (ISO)

hypertrophic cardiomyopathy (ISO)

immunodeficiency 65 (ISO)

lymphocytic choriomeningitis (ISO)

lysinuric protein intolerance (ISO)

Myocardial Reperfusion Injury (ISO)

Specific Granule Deficiency (ISO)

Subarachnoid Hemorrhage (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CD40 signaling pathway (IEA)

defense response to bacterium (IEA)

immune system process (IEA)

negative regulation of necroptotic process (IEA)

positive regulation of canonical NF-kappaB signal transduction (IEA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of xenophagy (IEA)

protein linear polyubiquitination (IEA)

protein polyubiquitination (IEA)

protein ubiquitination (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

T cell receptor signaling pathway (IEA)

Cellular Component

CD40 receptor complex (IEA)

cytoplasmic side of plasma membrane (IEA)

cytosol (IEA)

ISGF3 complex (ISO)

LUBAC complex (IEA)

nucleus (IEA)

Molecular Function

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

identical protein binding (IEA)

K48-linked polyubiquitin modification-dependent protein binding (IEA)

K63-linked polyubiquitin modification-dependent protein binding (IEA)

linear polyubiquitin binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (ISO)

transcription cis-regulatory region binding (IEA)

transferase activity (IEA)

ubiquitin binding (IEA)

ubiquitin protein ligase activity (IEA)

ubiquitin protein ligase binding (IEA)

ubiquitin-protein transferase activity (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

type II interferon signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

IRF9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	4,152,146 - 4,157,201 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	4,073,839 - 4,078,885 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	4,262,726 - 4,267,771 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	4,252,109 - 4,302,591 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,953,354 - 3,958,397 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	4,015,093 - 4,020,132 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	4,277,257 - 4,282,303 (+)	NCBI		UU_Cfam_GSD_1.0

IRF9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	24,161,265 - 24,166,565 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	24,161,234 - 24,168,043 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	24,630,474 - 24,635,774 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	23,700,262 - 23,705,614 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	23,700,363 - 23,705,612	NCBI
Celera	14	4,494,890 - 4,500,242 (+)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	4,745,386 - 4,750,738 (+)	NCBI		HuRef
CHM1_1	14	24,629,072 - 24,634,424 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	18,359,574 - 18,364,874 (+)	NCBI		T2T-CHM13v2.0

Irf9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	55,841,442 - 55,847,487 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	55,841,028 - 55,847,487 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	55,603,985 - 55,610,030 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	55,603,571 - 55,610,030 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	56,222,822 - 56,228,867 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	54,558,650 - 54,564,101 (+)	NCBI		MGSCv36	mm8
Celera	14	53,409,045 - 53,415,090 (+)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.19	NCBI

Irf9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	33,065,422 - 33,071,881 (+)	NCBI		GRCr8
mRatBN7.2	15	29,095,474 - 29,101,924 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	29,095,789 - 29,101,236 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	30,941,593 - 30,946,796 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	32,088,791 - 32,093,994 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	30,331,133 - 30,336,336 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	34,282,936 - 34,288,981 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	34,282,936 - 34,288,138 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	38,172,683 - 38,179,176 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	33,739,755 - 33,744,958 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	33,755,454 - 33,760,657 (+)	NCBI
Celera	15	28,671,799 - 28,677,002 (+)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

Irf9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	36,234,077 - 36,239,500 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	36,233,633 - 36,239,916 (-)	NCBI	ChiLan1.0	ChiLan1.0

IRF9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	25,515,160 - 25,520,969 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	24,731,654 - 24,737,461 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	4,937,068 - 4,942,870 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	23,061,994 - 23,067,824 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	23,061,990 - 23,067,824 (+)	Ensembl	panpan1.1		panPan2

Irf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	36,003,032 - 36,008,793 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	380,572 - 384,372 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	380,193 - 385,887 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IRF9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	75,126,622 - 75,139,640 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	75,133,800 - 75,139,641 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,405,098 - 80,410,938 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IRF9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	1,146,116 - 1,151,622 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	1,146,618 - 1,151,546 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666036	12,828,805 - 12,834,326 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Irf9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	8,370,289 - 8,376,950 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624820	8,369,830 - 8,376,593 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in IRF9
41 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	21	5	6	5	6	2	12	8	10	6
Low			1	1		1		4
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038482855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038482856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038584028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_855170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00845008431 ⟹ ENSCAFP00845006639

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	4,252,109 - 4,264,092 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845008447 ⟹ ENSCAFP00845006653

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	4,252,109 - 4,262,630 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845008462 ⟹ ENSCAFP00845006667

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	4,252,109 - 4,262,569 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845008467 ⟹ ENSCAFP00845006672

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	4,252,109 - 4,262,343 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845008481 ⟹ ENSCAFP00845006685

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	4,263,111 - 4,302,591 (+)	Ensembl

RefSeq Acc Id:

XM_038482855 ⟹ XP_038338783

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	3,953,354 - 3,958,397 (+)	NCBI

RefSeq Acc Id:

XM_038482856 ⟹ XP_038338784

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	3,953,875 - 3,958,397 (+)	NCBI

RefSeq Acc Id:

XM_038544287 ⟹ XP_038400215

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	4,277,257 - 4,282,303 (+)	NCBI

RefSeq Acc Id:

XM_038544288 ⟹ XP_038400216

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	4,277,778 - 4,282,303 (+)	NCBI

RefSeq Acc Id:

XM_038584028 ⟹ XP_038439956

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	8	4,074,360 - 4,078,885 (+)	NCBI

RefSeq Acc Id:

XM_038608406 ⟹ XP_038464334

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	4,015,093 - 4,020,132 (+)	NCBI

RefSeq Acc Id:

XM_038608407 ⟹ XP_038464335

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	4,015,614 - 4,020,132 (+)	NCBI

RefSeq Acc Id:

XM_038673213 ⟹ XP_038529141

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	4,262,726 - 4,267,771 (+)	NCBI

RefSeq Acc Id:

XM_038673215 ⟹ XP_038529143

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	4,263,247 - 4,267,771 (+)	NCBI

RefSeq Acc Id:

XM_855170 ⟹ XP_860263

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	4,152,146 - 4,157,201 (+)	NCBI
Dog10K_Boxer_Tasha	8	4,073,839 - 4,078,885 (+)	NCBI

Sequence:

show sequence

TGGCCAAGGAGGCTGTCCCCAGCCAGCCACCCGGCCTGGGCTTTCTCCTCCCCAGCGTCCTTTG
TTCCTTCATGGAATCCAGCTGATATTTGAGGTCACCTGCCAGGCACCAGGCAGGCACGAGGGGG
TAAACACAGATGCACGGGTGGTAGAGGGCTAGCCAGAGGCCTCCCGCCAGACTCCAGAATCCTG
GCCTCCCTGGGAAGCGGCAGCGGCTGGCAATCAGGGGGGTCTACGGGAGCGGTGGGGGCCCTCG
GATGCTGCCGCCCCCTGGTGGCGCGCGGTTGCCCTGCAGCTCGGACCACGTGATTTCTGAGAAG
CGGCGGCGCCTGGAGAACTGAAACTTAGGGTGGGGACTGTAGGAAGGGGCGGAGAGATCTGGAG
GGTGCCGGGCCGAGGGCAGCTTGCATCTTGGGACAGCCAGCTGGCCGCGCAGGATGGCTTCAGG
CAGGGCACGCTCCACCCGAAAGCTGCGGAACTGGGTGGTGGAGCAGGTGGAGAGCGGGCAGTTC
CCAGGGGTGTGCTGGGACGACGCAGCCAAGACCATGTTCCGGATCCCCTGGAAGCATGCGGGCA
AACAGGACTTCCGTGAGGACCAGGATGCCGCCTTCTTCAAGGCGTGGGCCATATTTAAGGGGAA
GTATAAGGAAGGGGACATGGAAGGCCCGGCTATCTGGAAGACTCGGCTGCGCTGTGCACTCAAC
AAGAGTCCTGAATTTGAGGAGGTGCCTGAGAACGGCCATAGGGACGGAGCTGAGCCCTACAAGG
TGTATCGGCTGCTGCCCTCCGGGACTCTCCCCGCCCAGCCTGGGACCCAGAAATCACCATCAAA
GCGACATCACAGCTCTGTGTCCTCCGAAAGGGAGGAGGATGAGAGGACCGTGAAGAATGGTGCT
CCCAGTCCCTCCTTGCTTGTGGACCCCTTCAGAAATGAGGAGGTGGGGGCCAATGGGGGAACGA
GCCGTTCAAACTTTGGGAGTAGCAGCAACAGCAGCCCTGAGCCCCAGGAAGGCACAGGTACCGC
TGAAGCCCCTTTCCAAGGAGATCAGGTGTCACTGGAGCTTCTGCCCCCTCCGGGCTCAGACTAC
TCGCTGCTGCTCACCTTCATCTACAGTGGGCGCATGGTGGGCAAAGCCCAGGTGCAGAGCCTGG
ACTGCCGCCTTGTGGCCGAGCCCTCTGGCTCCCAGTGCGGGATGGAGCAGGTCGTCTTTCCCAA
GCCTGACCCTCCAGAGCCCACCCAGCGCCTGCTGAGCCAGATCGAGAGGGGTGTCCTGGTAGCC
AGCAACTCCCGGGGCCTCTTCGTGCAGCGCCTCTGCCCCATCCCCGTCTCCTGGAATGCACCCC
AGGCCCCACCTGGCCCAGGCCCACATCTGCTGCCCAGCAATGAGTGTGTGGAGCTCTTCAGAAC
CACCCACTTCTGCAGAGACCTGGTCAGGTACTTCCAGGGCCTGGGTCCCCCACCTGAGTTCCAG
GTGACACTGAATTTCTGGGAGGAGAGCCCCGGCCCCAGCCGTACCCCAAAGAGCCTCATCACGG
TGCAGATGGAGCAGGCCTTTGCCCGACATTTACTGGAAGAGACTCCAGAGGAGCAGTCAGCTGC
CGTGTCCCTGCTGCAGAGCCTGGGAGACCCTGCTTCCTCCTCTCCTCTCTCTTCCTCCTATCTG
CTTTGAAAGAGACTCATTCTCCACGCTGTTGGCCTGCCTCCCTCGGTGACAGTTCTCCGTGGTT
GTCTCTGACAGCTGCGTCCTTCAACTGCTTATGTACCCGGCTGGTGGAGAACTCAAGGATGATC
TTTATACCCCCTGTTTTTTGTTTTTGTTTGTTTGTTTTTGTTTTTTTGAGATACACCTTTCATT
TCTGAGGAACTGACCTGGGAAAGTCCAAATGGTATGAACTCAGGGGACCTTTCCCTCTTCCCCC
AGTCCTAAAGCCAAGCACTTTACATTTTCTTCTTAGATGTTCACTAGGGATTTAAAATAAAATT
TTTTGAAAGAGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038338783	(Get FASTA)	NCBI Sequence Viewer
	XP_038338784	(Get FASTA)	NCBI Sequence Viewer
	XP_038400215	(Get FASTA)	NCBI Sequence Viewer
	XP_038400216	(Get FASTA)	NCBI Sequence Viewer
	XP_038439956	(Get FASTA)	NCBI Sequence Viewer
	XP_038464334	(Get FASTA)	NCBI Sequence Viewer
	XP_038464335	(Get FASTA)	NCBI Sequence Viewer
	XP_038529141	(Get FASTA)	NCBI Sequence Viewer
	XP_038529143	(Get FASTA)	NCBI Sequence Viewer
	XP_860263	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000017672.4
	ENSCAFP00030018266.1
	ENSCAFP00040006063.1
	ENSCAFP00040006142.1
	ENSCAFP00845006639.1
	ENSCAFP00845006653.1
	ENSCAFP00845006672.1
	ENSCAFP00845006685
	ENSCAFP00845006685.1

RefSeq Acc Id:

XP_860263 ⟸ XM_855170

- UniProtKB:

A0A8C0RX31 (UniProtKB/TrEMBL), A0A8I3MU00 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASGRARSTRKLRNWVVEQVESGQFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAFFKAWAI
FKGKYKEGDMEGPAIWKTRLRCALNKSPEFEEVPENGHRDGAEPYKVYRLLPSGTLPAQPGTQK
SPSKRHHSSVSSEREEDERTVKNGAPSPSLLVDPFRNEEVGANGGTSRSNFGSSSNSSPEPQEG
TGTAEAPFQGDQVSLELLPPPGSDYSLLLTFIYSGRMVGKAQVQSLDCRLVAEPSGSQCGMEQV
VFPKPDPPEPTQRLLSQIERGVLVASNSRGLFVQRLCPIPVSWNAPQAPPGPGPHLLPSNECVE
LFRTTHFCRDLVRYFQGLGPPPEFQVTLNFWEESPGPSRTPKSLITVQMEQAFARHLLEETPEE
QSAAVSLLQSLGDPASSSPLSSSYLL

hide sequence

RefSeq Acc Id:

XP_038338783 ⟸ XM_038482855

RefSeq Acc Id:

XP_038338784 ⟸ XM_038482856

RefSeq Acc Id:

XP_038464334 ⟸ XM_038608406

RefSeq Acc Id:

XP_038464335 ⟸ XM_038608407

RefSeq Acc Id:	XP_038529141 ⟸ XM_038673213
- UniProtKB:	A0A8C0RX31 (UniProtKB/TrEMBL), A0A8I3MU00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038529143 ⟸ XM_038673215
- UniProtKB:	A0A8C0RX31 (UniProtKB/TrEMBL), A0A8I3MU00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038439956 ⟸ XM_038584028
- UniProtKB:	A0A8C0RX31 (UniProtKB/TrEMBL), A0A8I3MU00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038400215 ⟸ XM_038544287
- UniProtKB:	A0A8C0RX31 (UniProtKB/TrEMBL), A0A8I3MU00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038400216 ⟸ XM_038544288
- UniProtKB:	A0A8C0RX31 (UniProtKB/TrEMBL), A0A8I3MU00 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845006672 ⟸ ENSCAFT00845008467

RefSeq Acc Id:

ENSCAFP00845006653 ⟸ ENSCAFT00845008447

RefSeq Acc Id:

ENSCAFP00845006685 ⟸ ENSCAFT00845008481

RefSeq Acc Id:

ENSCAFP00845006639 ⟸ ENSCAFT00845008431

RefSeq Acc Id:

ENSCAFP00845006667 ⟸ ENSCAFT00845008462

Protein Domains

B box-type IRF tryptophan pentad repeat RanBP2-type RING-type UBA

Promoters

RGD ID:

13684151

Promoter ID:

EPDNEW_C2219

Type:

single initiation site

Name:

IRF9_1

Description:

interferon regulatory factor 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	4,153,338 - 4,153,398	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000052369	UniProtKB/TrEMBL
	ENSCAFG00030011298	UniProtKB/TrEMBL
	ENSCAFG00040003643	UniProtKB/TrEMBL
	ENSCAFG00845004714	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000019065.5	UniProtKB/TrEMBL
	ENSCAFT00030020936.1	UniProtKB/TrEMBL
	ENSCAFT00040006982.1	UniProtKB/TrEMBL
	ENSCAFT00040007065.1	UniProtKB/TrEMBL
	ENSCAFT00845008431.1	UniProtKB/TrEMBL
	ENSCAFT00845008447.1	UniProtKB/TrEMBL
	ENSCAFT00845008467.1	UniProtKB/TrEMBL
	ENSCAFT00845008481	ENTREZGENE
	ENSCAFT00845008481.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	1.20.120.1750	UniProtKB/TrEMBL
	1.20.58.2190	UniProtKB/TrEMBL
	2.60.200.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	6.10.140.1100	UniProtKB/TrEMBL
	DNA helicase RuvA subunit, C-terminal domain	UniProtKB/TrEMBL
	Zinc finger, RanBP2-type	UniProtKB/TrEMBL
InterPro	Bbox1_RNF31-like	UniProtKB/TrEMBL
	BRcat_RBR_RNF31-like	UniProtKB/TrEMBL
	IBR_dom	UniProtKB/TrEMBL
	Interferon_reg_fac_CS	UniProtKB/TrEMBL
	Interferon_reg_fact_DNA-bd_dom	UniProtKB/TrEMBL
	Interferon_reg_factor-3	UniProtKB/TrEMBL
	PUB-like_dom_sf	UniProtKB/TrEMBL
	PUB_domain	UniProtKB/TrEMBL
	Rcat_RBR_RNF31-like	UniProtKB/TrEMBL
	RNF31-like	UniProtKB/TrEMBL
	RNF31-UBA	UniProtKB/TrEMBL
	RNF31_C	UniProtKB/TrEMBL
	RNF31_PUB	UniProtKB/TrEMBL
	RNF31_RBR_mRING-HC-like	UniProtKB/TrEMBL
	SMAD-like_dom_sf	UniProtKB/TrEMBL
	SMAD_FHA_dom_sf	UniProtKB/TrEMBL
	TRIAD_supradom	UniProtKB/TrEMBL
	UBA	UniProtKB/TrEMBL
	UBA_RNF31	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
	Znf_B-box	UniProtKB/TrEMBL
	Znf_RanBP2	UniProtKB/TrEMBL
	Znf_RanBP2_sf	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
NCBI Gene	IRF9	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF31	UniProtKB/TrEMBL
	INTERFERON REGULATORY FACTOR	UniProtKB/TrEMBL
	INTERFERON REGULATORY FACTOR 9	UniProtKB/TrEMBL
	PTHR16004	UniProtKB/TrEMBL
Pfam	E3_UbLigase_RBR	UniProtKB/TrEMBL
	HOIP-UBA	UniProtKB/TrEMBL
	IBR	UniProtKB/TrEMBL
	IRF	UniProtKB/TrEMBL
	IRF-3	UniProtKB/TrEMBL
	PUB	UniProtKB/TrEMBL
	PUB_1	UniProtKB/TrEMBL
PRINTS	INTFRNREGFCT	UniProtKB/TrEMBL
PROSITE	IRF_1	UniProtKB/TrEMBL
	IRF_2	UniProtKB/TrEMBL
	TRIAD	UniProtKB/TrEMBL
	UBA	UniProtKB/TrEMBL
	ZF_BBOX	UniProtKB/TrEMBL
	ZF_RANBP2_1	UniProtKB/TrEMBL
	ZF_RANBP2_2	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
SMART	IBR	UniProtKB/TrEMBL
	IRF	UniProtKB/TrEMBL
	IRF-3	UniProtKB/TrEMBL
	ZnF_RBZ	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF143503	UniProtKB/TrEMBL
	SSF46785	UniProtKB/TrEMBL
	SSF49879	UniProtKB/TrEMBL
	SSF90209	UniProtKB/TrEMBL
UniProt	A0A8C0Q6Z0_CANLF	UniProtKB/TrEMBL
	A0A8C0RX31	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MNW6_CANLF	UniProtKB/TrEMBL
	A0A8I3MU00	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MYA4_CANLF	UniProtKB/TrEMBL
	A0A8I3RTQ1_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:42097	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - PID (archival)

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