S100Z (S100 calcium binding protein Z) - Rat Genome Database

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Gene: S100Z (S100 calcium binding protein Z) Canis lupus familiaris
Analyze
Symbol: S100Z
Name: S100 calcium binding protein Z
RGD ID: 12348849
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); protein homodimerization activity (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome 2 (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein S100-Z
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1329,773,107 - 29,784,376 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,012,343 - 31,023,607 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0329,692,313 - 29,703,569 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1329,629,032 - 29,640,293 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,609,848 - 29,621,178 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,979,092 - 29,990,346 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
S100Z
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1329,773,107 - 29,784,376 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,012,343 - 31,023,607 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0329,692,313 - 29,703,569 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1329,629,032 - 29,640,293 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,609,848 - 29,621,178 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,979,092 - 29,990,346 (-)NCBIUU_Cfam_GSD_1.0
S100Z
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38576,850,014 - 76,952,953 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl576,850,001 - 76,921,650 (+)EnsemblGRCh38hg38GRCh38
GRCh37576,145,839 - 76,217,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,181,582 - 76,252,812 (+)NCBINCBI36Build 36hg18NCBI36
Build 34576,181,581 - 76,209,800NCBI
Celera572,040,311 - 72,111,532 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,353,650 - 71,423,705 (+)NCBIHuRef
CHM1_1575,578,986 - 75,650,179 (+)NCBICHM1_1
T2T-CHM13v2.0577,331,819 - 77,434,785 (+)NCBIT2T-CHM13v2.0
S100z
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,613,809 - 95,615,163 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,613,776 - 95,615,229 (-)EnsemblGRCm39 Ensembl
GRCm381395,477,301 - 95,478,655 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,477,268 - 95,478,721 (-)EnsemblGRCm38mm10GRCm38
MGSCv371396,247,256 - 96,248,610 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361396,578,000 - 96,579,354 (-)NCBIMGSCv36mm8
Celera1399,097,071 - 99,098,425 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1349.53NCBI
S100z
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,472,527 - 28,476,750 (-)NCBIGRCr8
mRatBN7.2226,737,796 - 26,753,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,738,776 - 26,752,390 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx233,776,927 - 33,778,551 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0231,877,145 - 31,878,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0226,692,975 - 26,694,599 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0225,188,381 - 25,203,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl225,188,782 - 25,190,495 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0244,344,729 - 44,348,915 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,852,473 - 25,854,097 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera222,803,619 - 22,805,242 (-)NCBICelera
Cytogenetic Map2q12NCBI
S100z
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542524,014,039 - 24,022,870 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542524,014,039 - 24,022,842 (-)NCBIChiLan1.0ChiLan1.0
S100Z
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2438,423,182 - 38,431,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1536,576,809 - 36,585,233 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0538,383,062 - 38,427,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1538,965,912 - 38,968,358 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl538,965,891 - 38,968,358 (-)Ensemblpanpan1.1panPan2
S100z
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213190,745,073 - 190,747,842 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936549111,395 - 113,662 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936549111,395 - 113,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100Z
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl285,767,614 - 85,770,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1285,757,636 - 85,771,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,348,154 - 87,386,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
S100z
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248691,365,911 - 1,369,465 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248691,365,615 - 1,369,457 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in S100Z
143 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038472701   ⟹   XP_038328629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1329,629,032 - 29,640,293 (-)NCBI
RefSeq Acc Id: XM_038533679   ⟹   XP_038389607
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0329,979,092 - 29,990,346 (-)NCBI
RefSeq Acc Id: XM_038597966   ⟹   XP_038453894
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0329,609,848 - 29,621,178 (-)NCBI
RefSeq Acc Id: XM_038660575   ⟹   XP_038516503
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0329,692,313 - 29,703,569 (-)NCBI
RefSeq Acc Id: XM_848126   ⟹   XP_853219
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1329,773,107 - 29,784,376 (-)NCBI
Dog10K_Boxer_Tasha331,012,343 - 31,023,607 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038328629 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389607 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453894 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516503 (Get FASTA)   NCBI Sequence Viewer  
  XP_853219 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_853219   ⟸   XM_848126
- Sequence:
RefSeq Acc Id: XP_038328629   ⟸   XM_038472701
RefSeq Acc Id: XP_038453894   ⟸   XM_038597966
RefSeq Acc Id: XP_038516503   ⟸   XM_038660575
RefSeq Acc Id: XP_038389607   ⟸   XM_038533679


Additional Information

Database Acc Id Source(s)
NCBI Gene S100Z ENTREZGENE