S100Z (S100 calcium binding protein Z) - Rat Genome Database

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Gene: S100Z (S100 calcium binding protein Z) Pan paniscus
Analyze
Symbol: S100Z
Name: S100 calcium binding protein Z
RGD ID: 11839531
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); metal ion binding (inferred); ASSOCIATED WITH Hermansky-Pudlak syndrome 2 (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2438,423,182 - 38,431,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1536,576,809 - 36,585,233 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0538,383,062 - 38,427,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1538,965,912 - 38,968,358 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl538,965,891 - 38,968,358 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
S100Z
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2438,423,182 - 38,431,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1536,576,809 - 36,585,233 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0538,383,062 - 38,427,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1538,965,912 - 38,968,358 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl538,965,891 - 38,968,358 (-)Ensemblpanpan1.1panPan2
S100Z
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38576,850,014 - 76,952,953 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl576,850,001 - 76,921,650 (+)EnsemblGRCh38hg38GRCh38
GRCh37576,145,839 - 76,217,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,181,582 - 76,252,812 (+)NCBINCBI36Build 36hg18NCBI36
Build 34576,181,581 - 76,209,800NCBI
Celera572,040,311 - 72,111,532 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,353,650 - 71,423,705 (+)NCBIHuRef
CHM1_1575,578,986 - 75,650,179 (+)NCBICHM1_1
T2T-CHM13v2.0577,331,819 - 77,434,785 (+)NCBIT2T-CHM13v2.0
S100z
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,613,809 - 95,615,163 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,613,776 - 95,615,229 (-)EnsemblGRCm39 Ensembl
GRCm381395,477,301 - 95,478,655 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,477,268 - 95,478,721 (-)EnsemblGRCm38mm10GRCm38
MGSCv371396,247,256 - 96,248,610 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361396,578,000 - 96,579,354 (-)NCBIMGSCv36mm8
Celera1399,097,071 - 99,098,425 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1349.53NCBI
S100z
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,472,527 - 28,476,750 (-)NCBIGRCr8
mRatBN7.2226,737,796 - 26,753,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,738,776 - 26,752,390 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx233,776,927 - 33,778,551 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0231,877,145 - 31,878,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0226,692,975 - 26,694,599 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0225,188,381 - 25,203,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl225,188,782 - 25,190,495 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0244,344,729 - 44,348,915 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,852,473 - 25,854,097 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera222,803,619 - 22,805,242 (-)NCBICelera
Cytogenetic Map2q12NCBI
S100z
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542524,014,039 - 24,022,870 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542524,014,039 - 24,022,842 (-)NCBIChiLan1.0ChiLan1.0
S100Z
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1329,773,107 - 29,784,376 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,012,343 - 31,023,607 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0329,692,313 - 29,703,569 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1329,629,032 - 29,640,293 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,609,848 - 29,621,178 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,979,092 - 29,990,346 (-)NCBIUU_Cfam_GSD_1.0
S100z
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213190,745,073 - 190,747,842 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936549111,395 - 113,662 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936549111,395 - 113,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100Z
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl285,767,614 - 85,770,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1285,757,636 - 85,771,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,348,154 - 87,386,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
S100z
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248691,365,911 - 1,369,465 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248691,365,615 - 1,369,457 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052964   ⟹   ENSPPAP00000030106
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl538,965,891 - 38,968,358 (-)Ensembl
RefSeq Acc Id: XM_055113089   ⟹   XP_054969064
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2438,423,182 - 38,431,606 (-)NCBI
NHGRI_mPanPan1536,576,809 - 36,585,233 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054969064 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000030106.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000030106   ⟸   ENSPPAT00000052964
RefSeq Acc Id: XP_054969064   ⟸   XM_055113089
- UniProtKB: A0A2R9BU51 (UniProtKB/TrEMBL)
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038063 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052964.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
NCBI Gene S100Z ENTREZGENE
PANTHER PTHR11639:SF72 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A2R9BU51 ENTREZGENE, UniProtKB/TrEMBL