SEC22A (SEC22 homolog A, vesicle trafficking protein) - Rat Genome Database

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Gene: SEC22A (SEC22 homolog A, vesicle trafficking protein) Canis lupus familiaris
Analyze
Symbol: SEC22A
Name: SEC22 homolog A, vesicle trafficking protein
RGD ID: 12330496
Description: INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SEC22 vesicle trafficking protein homolog A; vesicle-trafficking protein SEC22a
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13326,266,476 - 26,336,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3326,267,429 - 26,333,831 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3326,288,952 - 26,357,789 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03326,499,748 - 26,568,641 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3326,499,814 - 26,573,932 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13326,295,295 - 26,364,254 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03326,339,641 - 26,408,888 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03326,898,550 - 26,967,635 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SEC22A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13326,266,476 - 26,336,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3326,267,429 - 26,333,831 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3326,288,952 - 26,357,789 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03326,499,748 - 26,568,641 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3326,499,814 - 26,573,932 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13326,295,295 - 26,364,254 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03326,339,641 - 26,408,888 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03326,898,550 - 26,967,635 (+)NCBIUU_Cfam_GSD_1.0
SEC22A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383123,201,943 - 123,274,136 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3123,201,927 - 123,274,136 (+)EnsemblGRCh38hg38GRCh38
GRCh373122,920,790 - 122,992,983 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363124,403,465 - 124,474,050 (+)NCBINCBI36Build 36hg18NCBI36
Build 343124,403,498 - 124,474,043NCBI
Celera3121,327,594 - 121,400,083 (+)NCBICelera
Cytogenetic Map3q21.1NCBI
HuRef3120,294,056 - 120,366,197 (+)NCBIHuRef
CHM1_13122,884,472 - 122,956,673 (+)NCBICHM1_1
T2T-CHM13v2.03125,922,006 - 125,994,223 (+)NCBIT2T-CHM13v2.0
Sec22a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391635,131,505 - 35,184,222 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1635,131,501 - 35,184,288 (-)EnsemblGRCm39 Ensembl
GRCm381635,311,131 - 35,363,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1635,311,131 - 35,363,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv371635,311,217 - 35,364,004 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361635,230,878 - 35,283,665 (-)NCBIMGSCv36mm8
Celera1635,780,189 - 35,832,978 (-)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1625.21NCBI
Sec22a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,907,552 - 78,967,575 (+)NCBIGRCr8
mRatBN7.21165,402,583 - 65,462,329 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1165,402,684 - 65,462,319 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1174,224,928 - 74,284,604 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,887,201 - 66,946,879 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,918,478 - 65,978,160 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01168,633,080 - 68,686,553 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1168,633,160 - 68,686,548 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01171,720,693 - 71,777,816 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,267,960 - 67,281,677 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11167,325,548 - 67,338,768 (+)NCBI
Celera1164,862,976 - 64,921,131 (+)NCBICelera
Cytogenetic Map11q22NCBI
Sec22a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542722,388,827 - 22,456,149 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542722,389,552 - 22,456,149 (+)NCBIChiLan1.0ChiLan1.0
SEC22A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22121,156,424 - 121,227,462 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13121,161,201 - 121,230,169 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03120,299,636 - 120,370,517 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13127,202,974 - 127,273,475 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3127,203,060 - 127,271,841 (+)Ensemblpanpan1.1panPan2
Sec22a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602127,998,029 - 128,073,994 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367251,906,362 - 1,975,567 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367251,906,304 - 1,982,413 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC22A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13137,170,961 - 137,250,550 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113137,175,790 - 137,250,698 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213146,719,530 - 146,793,673 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEC22A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12257,597,146 - 57,666,370 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2257,597,880 - 57,669,151 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041108,675,852 - 108,760,936 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec22a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249121,531,620 - 1,628,265 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SEC22A
1034 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8 10 8
Low 5 5 14 6 6 6 6 6 2 10 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005639572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014110276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014110277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038445167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038445168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038445169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038445170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038445171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038583041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038583042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038583043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038583044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038583045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000019159   ⟹   ENSCAFP00000017765
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3326,267,429 - 26,333,831 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000079447   ⟹   ENSCAFP00000050991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3326,274,351 - 26,333,831 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045106   ⟹   ENSCAFP00845035363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3326,499,814 - 26,567,435 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045175   ⟹   ENSCAFP00845035421
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3326,499,814 - 26,566,449 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045247   ⟹   ENSCAFP00845035479
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3326,499,819 - 26,568,537 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045311   ⟹   ENSCAFP00845035536
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3326,500,691 - 26,558,356 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045394   ⟹   ENSCAFP00845035606
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3326,507,616 - 26,573,932 (+)Ensembl
RefSeq Acc Id: XM_005639572   ⟹   XP_005639629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13326,266,476 - 26,336,544 (+)NCBI
Dog10K_Boxer_Tasha3326,288,952 - 26,357,789 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014110276   ⟹   XP_013965751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13326,266,476 - 26,327,975 (+)NCBI
Dog10K_Boxer_Tasha3326,288,952 - 26,349,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014110277   ⟹   XP_013965752
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13326,266,492 - 26,327,944 (+)NCBI
Dog10K_Boxer_Tasha3326,288,977 - 26,349,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022413738   ⟹   XP_022269446
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13326,266,692 - 26,327,975 (+)NCBI
Dog10K_Boxer_Tasha3326,289,127 - 26,349,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038445167   ⟹   XP_038301095
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03326,499,748 - 26,560,766 (+)NCBI
RefSeq Acc Id: XM_038445168   ⟹   XP_038301096
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03326,500,347 - 26,560,766 (+)NCBI
RefSeq Acc Id: XM_038445169   ⟹   XP_038301097
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03326,499,923 - 26,560,766 (+)NCBI
RefSeq Acc Id: XM_038445170   ⟹   XP_038301098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03326,499,748 - 26,568,641 (+)NCBI
RefSeq Acc Id: XM_038445171   ⟹   XP_038301099
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03326,499,773 - 26,560,766 (+)NCBI
RefSeq Acc Id: XM_038462317   ⟹   XP_038318245
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3326,289,551 - 26,349,945 (+)NCBI
RefSeq Acc Id: XM_038519403   ⟹   XP_038375331
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13326,295,295 - 26,356,416 (+)NCBI
RefSeq Acc Id: XM_038519404   ⟹   XP_038375332
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13326,295,873 - 26,356,416 (+)NCBI
RefSeq Acc Id: XM_038519405   ⟹   XP_038375333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13326,295,470 - 26,356,416 (+)NCBI
RefSeq Acc Id: XM_038519406   ⟹   XP_038375334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13326,295,295 - 26,364,254 (+)NCBI
RefSeq Acc Id: XM_038519407   ⟹   XP_038375335
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13326,295,320 - 26,356,416 (+)NCBI
RefSeq Acc Id: XM_038583041   ⟹   XP_038438969
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03326,898,550 - 26,959,790 (+)NCBI
RefSeq Acc Id: XM_038583042   ⟹   XP_038438970
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03326,899,130 - 26,959,790 (+)NCBI
RefSeq Acc Id: XM_038583043   ⟹   XP_038438971
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03326,898,725 - 26,959,790 (+)NCBI
RefSeq Acc Id: XM_038583044   ⟹   XP_038438972
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03326,898,550 - 26,967,635 (+)NCBI
RefSeq Acc Id: XM_038583045   ⟹   XP_038438973
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03326,898,575 - 26,959,790 (+)NCBI
RefSeq Acc Id: XM_038647433   ⟹   XP_038503361
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03326,339,641 - 26,401,043 (+)NCBI
RefSeq Acc Id: XM_038647434   ⟹   XP_038503362
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03326,340,219 - 26,401,043 (+)NCBI
RefSeq Acc Id: XM_038647435   ⟹   XP_038503363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03326,339,816 - 26,401,043 (+)NCBI
RefSeq Acc Id: XM_038647436   ⟹   XP_038503364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03326,339,641 - 26,408,888 (+)NCBI
RefSeq Acc Id: XM_038647437   ⟹   XP_038503365
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03326,339,666 - 26,401,043 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005639629 (Get FASTA)   NCBI Sequence Viewer  
  XP_013965751 (Get FASTA)   NCBI Sequence Viewer  
  XP_013965752 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269446 (Get FASTA)   NCBI Sequence Viewer  
  XP_038301095 (Get FASTA)   NCBI Sequence Viewer  
  XP_038301096 (Get FASTA)   NCBI Sequence Viewer  
  XP_038301097 (Get FASTA)   NCBI Sequence Viewer  
  XP_038301098 (Get FASTA)   NCBI Sequence Viewer  
  XP_038301099 (Get FASTA)   NCBI Sequence Viewer  
  XP_038318245 (Get FASTA)   NCBI Sequence Viewer  
  XP_038375331 (Get FASTA)   NCBI Sequence Viewer  
  XP_038375332 (Get FASTA)   NCBI Sequence Viewer  
  XP_038375333 (Get FASTA)   NCBI Sequence Viewer  
  XP_038375334 (Get FASTA)   NCBI Sequence Viewer  
  XP_038375335 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438969 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438970 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438971 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438972 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438973 (Get FASTA)   NCBI Sequence Viewer  
  XP_038503361 (Get FASTA)   NCBI Sequence Viewer  
  XP_038503362 (Get FASTA)   NCBI Sequence Viewer  
  XP_038503363 (Get FASTA)   NCBI Sequence Viewer  
  XP_038503364 (Get FASTA)   NCBI Sequence Viewer  
  XP_038503365 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000017765.4
  ENSCAFP00000050991.2
  ENSCAFP00000068003.1
  ENSCAFP00000068764.1
  ENSCAFP00000070261.1
  ENSCAFP00030024515.1
  ENSCAFP00030024564.1
  ENSCAFP00030024641.1
  ENSCAFP00040037245.1
  ENSCAFP00040037265.1
  ENSCAFP00040037305.1
  ENSCAFP00845035363
  ENSCAFP00845035363.1
  ENSCAFP00845035421.1
  ENSCAFP00845035479.1
  ENSCAFP00845035536.1
  ENSCAFP00845035606.1
Reference Protein Sequences
RefSeq Acc Id: XP_013965752   ⟸   XM_014110277
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013965751   ⟸   XM_014110276
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TNA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005639629   ⟸   XM_005639572
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TJN1 (UniProtKB/TrEMBL),   A0A8I3PV59 (UniProtKB/TrEMBL),   A0A8I3PQI8 (UniProtKB/TrEMBL),   A0A8P0TKA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269446   ⟸   XM_022413738
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TNA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000050991   ⟸   ENSCAFT00000079447
RefSeq Acc Id: ENSCAFP00000017765   ⟸   ENSCAFT00000019159
RefSeq Acc Id: XP_038375334   ⟸   XM_038519406
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038375331   ⟸   XM_038519403
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038375335   ⟸   XM_038519407
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038375333   ⟸   XM_038519405
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038375332   ⟸   XM_038519404
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038503364   ⟸   XM_038647436
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038503361   ⟸   XM_038647433
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038503365   ⟸   XM_038647437
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038503363   ⟸   XM_038647435
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038503362   ⟸   XM_038647434
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038301098   ⟸   XM_038445170
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TJN1 (UniProtKB/TrEMBL),   A0A8I3PV59 (UniProtKB/TrEMBL),   A0A8I3PQI8 (UniProtKB/TrEMBL),   A0A8P0TKA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038301095   ⟸   XM_038445167
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TNA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038301099   ⟸   XM_038445171
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038301097   ⟸   XM_038445169
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TNA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038301096   ⟸   XM_038445168
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TNA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318245   ⟸   XM_038462317
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TNA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438972   ⟸   XM_038583044
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TJN1 (UniProtKB/TrEMBL),   A0A8I3PQI8 (UniProtKB/TrEMBL),   A0A8I3PV59 (UniProtKB/TrEMBL),   A0A8P0TKA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438969   ⟸   XM_038583041
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TNA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438973   ⟸   XM_038583045
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038438971   ⟸   XM_038583043
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TNA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438970   ⟸   XM_038583042
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TNA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845035421   ⟸   ENSCAFT00845045175
RefSeq Acc Id: ENSCAFP00845035606   ⟸   ENSCAFT00845045394
RefSeq Acc Id: ENSCAFP00845035479   ⟸   ENSCAFT00845045247
RefSeq Acc Id: ENSCAFP00845035363   ⟸   ENSCAFT00845045106
RefSeq Acc Id: ENSCAFP00845035536   ⟸   ENSCAFT00845045311
Protein Domains
Longin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012072 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015217 UniProtKB/TrEMBL
  ENSCAFG00040022976 UniProtKB/TrEMBL
  ENSCAFG00845025544 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019159.5 UniProtKB/TrEMBL
  ENSCAFT00000079447.2 UniProtKB/TrEMBL
  ENSCAFT00000100236.1 UniProtKB/TrEMBL
  ENSCAFT00000102136.1 UniProtKB/TrEMBL
  ENSCAFT00000108692.1 UniProtKB/TrEMBL
  ENSCAFT00030028088.1 UniProtKB/TrEMBL
  ENSCAFT00030028150.1 UniProtKB/TrEMBL
  ENSCAFT00030028247.1 UniProtKB/TrEMBL
  ENSCAFT00040042707.1 UniProtKB/TrEMBL
  ENSCAFT00040042726.1 UniProtKB/TrEMBL
  ENSCAFT00040042769.1 UniProtKB/TrEMBL
  ENSCAFT00845045106 ENTREZGENE
  ENSCAFT00845045106.1 UniProtKB/TrEMBL
  ENSCAFT00845045175.1 UniProtKB/TrEMBL
  ENSCAFT00845045247.1 UniProtKB/TrEMBL
  ENSCAFT00845045311.1 UniProtKB/TrEMBL
  ENSCAFT00845045394.1 UniProtKB/TrEMBL
Gene3D-CATH Longin domain UniProtKB/TrEMBL
InterPro Longin-like_dom_sf UniProtKB/TrEMBL
  Longin_dom UniProtKB/TrEMBL
  Sec22a/c UniProtKB/TrEMBL
KEGG Report cfa:100686076 UniProtKB/TrEMBL
NCBI Gene SEC22A ENTREZGENE
PANTHER PTHR46258 UniProtKB/TrEMBL
  PTHR46258:SF3 UniProtKB/TrEMBL
Pfam Longin UniProtKB/TrEMBL
PROSITE LONGIN UniProtKB/TrEMBL
SMART Longin UniProtKB/TrEMBL
Superfamily-SCOP SSF64356 UniProtKB/TrEMBL
UniProt A0A8C0NH61_CANLF UniProtKB/TrEMBL
  A0A8C0TJN1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TNA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PLX0_CANLF UniProtKB/TrEMBL
  A0A8I3PQI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PV59 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PW76_CANLF UniProtKB/TrEMBL
  A0A8I3S9J7_CANLF UniProtKB/TrEMBL
  A0A8P0T3K9_CANLF UniProtKB/TrEMBL
  A0A8P0TKA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TKM4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:45967 ENTREZGENE